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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0430400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.51 (0.053) R2 : 0.178
β1 : -0.0731 (0.195) R2dD : 0.000174 R2D : 0.00176
β2 : 0.629 (0.128) R2dC : 0.0451 R2C : 0.0197
β3 : 6.48 (0.809) R2dE : 0.371 R2E : -0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.3 (1.97) R2dD*E : 0.215 R2D*E : -0.222
γ1 : 0.478 (0.112) R2dN8 : 0.0445 R2N8 : 0.024
σ : 0.976
deviance : 439.36
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_____
C
peak time of C : 22.4
E
wheather : wind
threshold : 7.2
memory length : 5
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
442.65 0.989 3.51 -0.0227 0.652 6.02 -0.319 11.3 0.488 22.4 7.031 10 23.2 --
473.38 1.01 3.49 -0.0339 0.666 4.35 -1.23 -- 0.62 22.1 7.032 2 0.49 --
439.36 0.976 3.51 -0.0731 0.629 6.48 -- 12.3 0.478 22.4 7.2 5 22.8 --
470.06 1.01 3.46 -0.0921 0.597 3.25 -- -- 0.487 22 7.1 2 0.359 --
461.68 1 3.51 -0.0227 -- 6.69 -- 13.5 0.468 -- 7.27 4 22.8 --
502 1.05 3.47 -0.339 0.483 -- -0.348 -- 0.398 21.7 -- -- -- --
502.45 1.05 3.47 -0.326 0.485 -- -- -- 0.398 21.7 -- -- -- --
490.77 1.03 3.45 -0.135 -- 2.94 -- -- 0.472 -- 7.2 2 0.699 --
470.25 1.01 3.45 -- 0.599 3.3 -- -- 0.5 22 7.063 2 0.355 --
516.41 1.06 3.46 -0.321 -- -- -- -- 0.397 -- -- -- -- --
505.25 1.05 3.47 -- 0.484 -- -- -- 0.434 21.6 -- -- -- --
491.09 1.03 3.44 -- -- 2.95 -- -- 0.493 -- 7.051 2 0.779 --
519.14 1.06 3.45 -- -- -- -- -- 0.433 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.87 wind 7 10 > th dose independent sin 5 NA
4 447.73 wind 7 10 > th dose independent rect. 3 9
12 448.49 wind 7 10 > th dose independent rect. 9 3
19 448.91 wind 7 90 > th dose independent rect. 3 8
31 449.45 wind 7 90 > th dose independent rect. 8 3
37 450.13 wind 7 10 < th dose independent sin 4 NA
39 450.41 wind 7 90 > th dose independent rect. 24 11
40 450.96 wind 7 10 > th dose independent rect. 3 13
49 451.58 wind 7 10 > th dose independent rect. 9 7
55 452.20 wind 5 90 > th dose dependent rect. 8 3
57 452.82 wind 5 90 > th dose dependent rect. 3 8
70 454.11 wind 3 30 > th dose dependent rect. 10 1
102 457.38 wind 7 1440 < th dose independent rect. 9 1
103 457.44 wind 5 10 > th dose dependent sin 5 NA
118 459.08 wind 7 10 > th dose dependent rect. 4 7
139 459.91 wind 7 1440 > th dose independent rect. 9 1
149 460.13 wind 5 10 > th dose dependent rect. 3 13
156 460.58 humidity 90 270 < th dose dependent rect. 4 1
162 460.83 wind 5 10 > th dose dependent rect. 7 9
196 461.95 wind 7 1440 > th dose independent rect. 2 9
214 462.37 wind 7 1440 < th dose independent rect. 2 9
240 462.80 wind 5 1440 > th dose dependent rect. 3 8
244 462.85 wind 5 90 > th dose dependent sin 6 NA
288 463.76 humidity 80 270 < th dose independent rect. 4 2
292 463.80 wind 7 1440 > th dose independent rect. 7 4
316 464.16 wind 7 1440 < th dose independent rect. 7 4
382 465.13 wind 5 1440 > th dose dependent rect. 9 1
404 465.29 wind 5 1440 > th dose dependent rect. 5 3
433 465.63 wind 5 1440 > th dose dependent rect. 3 4
463 466.10 atmosphere 995 14400 > th dose independent rect. 10 4
493 466.29 wind 5 90 < th dose independent rect. 4 12
527 466.50 wind 5 1440 > th dose independent rect. 4 1
643 467.21 wind 7 10 < th dose independent rect. 13 23
650 467.25 wind 7 10 < th dose independent rect. 11 23