Os04g0430000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ser Thr specific protein kinase-like protein.
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Os04g0430000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ser Thr specific protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.03 | 0.835 | 5.21 | -2.16 | 1.8 | 0.803 | 0.607 | 0.982 | -0.266 | 4.87 | 31.7 | 1091 | -- | -- |
| 316.16 | 0.828 | 5.23 | -2.29 | 1.81 | 0.895 | 0.716 | -- | -0.263 | 4.83 | 31.7 | 1109 | -- | -- |
| 316.94 | 0.829 | 5.21 | -2.13 | 1.8 | 0.783 | -- | 1.16 | -0.269 | 4.84 | 31.8 | 1102 | -- | -- |
| 316.99 | 0.829 | 5.23 | -2.31 | 1.8 | 0.911 | -- | -- | -0.268 | 4.84 | 31.7 | 1110 | -- | -- |
| 484.54 | 1.03 | 5.22 | -2.07 | -- | 0.907 | -- | 1.5 | -0.187 | -- | 31.43 | 1172 | -- | -- |
| 354.52 | 0.883 | 5.27 | -2.09 | 1.87 | -- | 0.733 | -- | -0.425 | 4.61 | -- | -- | -- | -- |
| 355.94 | 0.883 | 5.27 | -2.09 | 1.87 | -- | -- | -- | -0.429 | 4.59 | -- | -- | -- | -- |
| 485.03 | 1.03 | 5.24 | -2.29 | -- | 1.09 | -- | -- | -0.187 | -- | 31.42 | 1172 | -- | -- |
| 452.64 | 0.991 | 5.19 | -- | 1.79 | 0.762 | -- | -- | -0.0417 | 4.75 | 34.18 | 1087 | -- | -- |
| 543.02 | 1.09 | 5.29 | -2.02 | -- | -- | -- | -- | -0.38 | -- | -- | -- | -- | -- |
| 471.53 | 1.02 | 5.22 | -- | 1.84 | -- | -- | -- | -0.196 | 4.62 | -- | -- | -- | -- |
| 618.1 | 1.16 | 5.21 | -- | -- | 0.838 | -- | -- | -0.0156 | -- | 33.73 | 1144 | -- | -- |
| 650.87 | 1.19 | 5.24 | -- | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 312.11 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 3 | 313.44 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 4 | 313.56 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 18 | 313.68 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 2 |
| 19 | 313.80 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 35 | 314.16 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 36 | 314.19 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 48 | 314.32 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 52 | 314.68 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 53 | 314.71 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 68 | 315.34 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 72 | 315.52 | wind | 1 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 164 | 316.92 | wind | 1 | 90 | < th | dose independent | rect. | 1 | 4 |
| 260 | 318.75 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 290 | 318.97 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 341 | 319.36 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 349 | 319.49 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 407 | 319.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 408 | 319.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 420 | 319.79 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 427 | 319.87 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 22 |
| 458 | 320.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 488 | 320.35 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 503 | 320.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 539 | 320.55 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 541 | 320.57 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 561 | 320.72 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 568 | 320.75 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 572 | 320.79 | wind | 1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 587 | 321.01 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 590 | 321.06 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 610 | 321.13 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 14 |
| 634 | 321.25 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 3 |
| 653 | 321.35 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 655 | 321.37 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 701 | 321.43 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 795 | 321.70 | humidity | 60 | 1440 | > th | dose independent | sin | 13 | NA |
| 799 | 321.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 800 | 321.74 | radiation | 10 | 1440 | > th | dose independent | sin | 15 | NA |
| 808 | 321.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 846 | 321.92 | humidity | 70 | 1440 | < th | dose dependent | sin | 13 | NA |
| 869 | 321.96 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 910 | 322.01 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |