Os04g0429600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CSLH1 (Fragment).
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Os04g0429600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CSLH1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 539.58 | 1.09 | 6.12 | 5.61 | 2.15 | -7.38 | 0.367 | -10.5 | 1.84 | 11.2 | 1.171 | 10066 | -- | -- |
| 655.8 | 1.19 | 5.9 | 7.63 | 1.76 | -6.33 | 1.22 | -- | 2.38 | 11.4 | 1.611 | 9966 | -- | -- |
| 538.47 | 1.08 | 6.12 | 5.66 | 1.87 | -7.35 | -- | -10.3 | 1.84 | 11.3 | 1.18 | 10011 | -- | -- |
| 592.26 | 1.13 | 5.89 | 7.78 | 1.71 | -5.86 | -- | -- | 2.47 | 11.2 | 1.462 | 15667 | -- | -- |
| 650.53 | 1.19 | 6.16 | 5.83 | -- | -7.57 | -- | -10.3 | 1.91 | -- | 1.19 | 9817 | -- | -- |
| 1384.91 | 1.74 | 6.27 | 6.47 | 2.41 | -- | 0.701 | -- | 0.672 | 11.5 | -- | -- | -- | -- |
| 1387.03 | 1.74 | 6.27 | 6.49 | 2.4 | -- | -- | -- | 0.675 | 11.5 | -- | -- | -- | -- |
| 709.04 | 1.24 | 5.86 | 8.76 | -- | -6.82 | -- | -- | 2.44 | -- | 1.5 | 15525 | -- | -- |
| 1862 | 2.01 | 6.15 | -- | 1.93 | -4.82 | -- | -- | 1.21 | 11.1 | 6.854 | 9994 | -- | -- |
| 1749.95 | 1.95 | 6.32 | 6.43 | -- | -- | -- | -- | 0.649 | -- | -- | -- | -- | -- |
| 2498.34 | 2.34 | 6.43 | -- | 2.34 | -- | -- | -- | -0.048 | 11.3 | -- | -- | -- | -- |
| 2048.54 | 2.11 | 6.3 | -- | -- | -5.25 | -- | -- | 0.976 | -- | 6.72 | 9789 | -- | -- |
| 2840.19 | 2.49 | 6.49 | -- | -- | -- | -- | -- | -0.0639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 522.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 4 | 524.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 14 | 527.03 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 19 | 527.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 29 | 529.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 36 | 530.48 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 41 | 531.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 49 | 532.09 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 52 | 532.38 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 65 | 532.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 67 | 532.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 70 | 532.92 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 77 | 533.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 92 | 535.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 96 | 535.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 97 | 535.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 145 | 537.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 148 | 537.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 153 | 537.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 154 | 537.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 167 | 538.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 199 | 538.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 202 | 538.32 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 205 | 538.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 209 | 538.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 239 | 539.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 254 | 539.67 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 305 | 540.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 319 | 540.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 320 | 540.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 322 | 540.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 323 | 540.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 16 |
| 369 | 541.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 508 | 544.72 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 509 | 544.72 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 572 | 545.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 574 | 545.76 | radiation | 1 | 14400 | > th | dose independent | sin | 3 | NA |
| 591 | 546.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 18 |
| 608 | 546.29 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 649 | 547.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 16 |
| 650 | 547.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 668 | 547.60 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 669 | 547.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 675 | 547.74 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 881 | 552.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 920 | 552.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 14 |
| 943 | 553.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 961 | 553.90 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 968 | 554.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 969 | 554.14 | radiation | 20 | 14400 | < th | dose dependent | rect. | 18 | 12 |