Os04g0429500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellulose synthase-like H2.
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Os04g0429500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellulose synthase-like H2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.05 | 0.286 | 13.4 | 1.06 | 0.512 | -0.637 | 0.0972 | 0.202 | 0.494 | 23.5 | 25.8 | 10 | -- | -- |
| 37.03 | 0.283 | 13.4 | 1.04 | 0.516 | -0.631 | 0.0802 | -- | 0.486 | 23.5 | 26.1 | 9 | -- | -- |
| 37.05 | 0.283 | 13.4 | 1.05 | 0.52 | -0.642 | -- | 0.137 | 0.484 | 23.5 | 26.1 | 9 | -- | -- |
| 37.05 | 0.284 | 13.4 | 1.04 | 0.518 | -0.633 | -- | -- | 0.483 | 23.6 | 26.1 | 9 | -- | -- |
| 50.47 | 0.331 | 13.4 | 1.19 | -- | -0.962 | -- | 0.692 | 0.581 | -- | 24.5 | 5 | -- | -- |
| 42.59 | 0.306 | 13.4 | 0.957 | 0.676 | -- | 0.254 | -- | 0.459 | 0.541 | -- | -- | -- | -- |
| 42.86 | 0.307 | 13.4 | 0.947 | 0.675 | -- | -- | -- | 0.458 | 0.493 | -- | -- | -- | -- |
| 50.62 | 0.331 | 13.4 | 1.1 | -- | -0.919 | -- | -- | 0.555 | -- | 24.49 | 5 | -- | -- |
| 64.3 | 0.373 | 13.5 | -- | 0.606 | -0.389 | -- | -- | 0.358 | 0.0787 | 26.8 | 12 | -- | -- |
| 71.47 | 0.395 | 13.4 | 0.97 | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
| 66.5 | 0.381 | 13.5 | -- | 0.689 | -- | -- | -- | 0.353 | 0.562 | -- | -- | -- | -- |
| 81.79 | 0.421 | 13.4 | -- | -- | -0.759 | -- | -- | 0.417 | -- | 24.6 | 5 | -- | -- |
| 96.31 | 0.458 | 13.4 | -- | -- | -- | -- | -- | 0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.93 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 16 | 36.08 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 18 | 36.16 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 21 | 36.51 | temperature | 30 | 720 | < th | dose independent | sin | 6 | NA |
| 22 | 36.62 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 15 |
| 23 | 36.67 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 24 | 36.68 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 17 |
| 42 | 36.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 43 | 36.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 44 | 36.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 47 | 36.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 48 | 36.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 50 | 36.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 72 | 37.07 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 83 | 37.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 85 | 37.16 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 14 | 9 |
| 120 | 37.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 129 | 37.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 146 | 37.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 147 | 37.30 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 166 | 37.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 170 | 37.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 191 | 37.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 199 | 37.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 202 | 37.38 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 213 | 37.40 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 214 | 37.40 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 226 | 37.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 231 | 37.44 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 22 |
| 261 | 37.50 | temperature | 25 | 10 | > th | dose dependent | sin | 20 | NA |
| 300 | 37.56 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 335 | 37.58 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 336 | 37.58 | temperature | 30 | 720 | > th | dose dependent | sin | 7 | NA |
| 364 | 37.60 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 373 | 37.61 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 377 | 37.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 21 |
| 416 | 37.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 424 | 37.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 479 | 37.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 497 | 37.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 17 |
| 614 | 37.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 650 | 37.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 655 | 37.88 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 12 |
| 656 | 37.88 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 16 |
| 724 | 37.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 736 | 37.94 | temperature | 25 | 10 | > th | dose independent | rect. | 2 | 18 |
| 742 | 37.94 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 1 |
| 767 | 37.96 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 787 | 37.97 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 794 | 37.98 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 841 | 38.01 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 10 |
| 999 | 38.06 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |