Os04g0428300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os04g0428300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 311.54 | 0.829 | 4.12 | -1.22 | 0.569 | 4.37 | 1.1 | -18.9 | -0.29 | 20.4 | 999.9 | 230 | -- | -- |
| 321.37 | 0.841 | 3.92 | -0.0488 | 0.584 | 0.823 | 1.16 | -- | -0.298 | 20.6 | 999.9 | 230 | -- | -- |
| 315.32 | 0.827 | 4.12 | -1.27 | 0.57 | 4.4 | -- | -19.1 | -0.29 | 20.2 | 999.8 | 230 | -- | -- |
| 319.36 | 0.832 | 3.91 | -0.111 | 0.566 | 0.999 | -- | -- | -0.287 | 20.4 | 1000 | 228 | -- | -- |
| 332.91 | 0.85 | 4.11 | -1.28 | -- | 4.3 | -- | -18.4 | -0.293 | -- | 1000 | 240 | -- | -- |
| 339.93 | 0.864 | 3.93 | 0.0971 | 0.582 | -- | 1.14 | -- | -0.353 | 20.4 | -- | -- | -- | -- |
| 344.01 | 0.869 | 3.93 | 0.063 | 0.583 | -- | -- | -- | -0.352 | 20.3 | -- | -- | -- | -- |
| 337.19 | 0.855 | 3.9 | -0.117 | -- | 1.02 | -- | -- | -0.292 | -- | 1000 | 243 | -- | -- |
| 319.68 | 0.833 | 3.91 | -- | 0.569 | 0.98 | -- | -- | -0.277 | 20.4 | 1000 | 227 | -- | -- |
| 362.81 | 0.89 | 3.91 | 0.059 | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
| 344.11 | 0.868 | 3.93 | -- | 0.583 | -- | -- | -- | -0.359 | 20.3 | -- | -- | -- | -- |
| 337.55 | 0.856 | 3.89 | -- | -- | 0.999 | -- | -- | -0.281 | -- | 1000 | 243 | -- | -- |
| 362.9 | 0.889 | 3.91 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 298.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 299.91 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 3 | 300.16 | wind | 3 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 4 | 300.20 | wind | 5 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 8 | 300.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 11 | 300.92 | wind | 3 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 20 | 301.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 42 | 303.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 52 | 303.35 | wind | 1 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 53 | 303.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 2 |
| 107 | 305.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 172 | 306.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 181 | 306.69 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 190 | 306.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 223 | 307.01 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 310 | 307.53 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 313 | 307.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 385 | 307.94 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 401 | 308.06 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 542 | 308.70 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 686 | 309.33 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 699 | 309.39 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 754 | 309.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 770 | 309.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 802 | 309.76 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 820 | 309.85 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 850 | 310.03 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 862 | 310.10 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 871 | 310.15 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 887 | 310.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 889 | 310.23 | temperature | 15 | 4320 | > th | dose dependent | sin | 12 | NA |
| 921 | 310.32 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 19 | 22 |
| 927 | 310.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 942 | 310.39 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 982 | 310.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 18 |