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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0423800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0262) R2 : 4.16e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0076 (0.0552) R2dN8 : 5.37e-05 R2N8 : 4.16e-05
σ : 0.494
deviance : 111.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.38 0.48 2.83 0.203 0.121 -0.13 -0.432 3.82 0.0355 8.33 0.2756 103 -- --
108.19 0.484 2.86 0.0973 0.108 0.437 -0.376 -- 0.0384 8.69 0.3001 109 -- --
104.7 0.477 2.83 0.2 0.127 -0.157 -- 3.87 0.0349 9.07 0.05558 103 -- --
108.6 0.485 2.85 0.0896 0.116 0.445 -- -- 0.0498 9.43 0.2965 103 -- --
105.54 0.478 2.83 0.188 -- -0.0882 -- 3.79 0.0398 -- 0.01898 103 -- --
109.86 0.491 2.86 0.144 0.147 -- -0.311 -- 0.0211 8.52 -- -- -- --
110.14 0.491 2.86 0.133 0.151 -- -- -- 0.0206 7.96 -- -- -- --
109.29 0.487 2.85 0.0769 -- 0.458 -- -- 0.0482 -- 0.3 103 -- --
108.79 0.486 2.85 -- 0.11 0.467 -- -- 0.0344 9.76 0.3 103 -- --
111.39 0.493 2.86 0.134 -- -- -- -- 0.0225 -- -- -- -- --
110.61 0.492 2.86 -- 0.152 -- -- -- 0.00575 7.9 -- -- -- --
109.46 0.487 2.86 -- -- 0.5 -- -- 0.0376 -- 0.3 103 -- --
111.87 0.494 2.86 -- -- -- -- -- 0.0076 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.98 humidity 80 10 < th dose independent rect. 23 8
3 95.21 humidity 80 10 < th dose dependent rect. 23 7
7 96.29 humidity 80 10 < th dose independent rect. 5 1
13 96.29 humidity 80 10 < th dose dependent rect. 5 1
57 98.34 atmosphere 1005 30 > th dose dependent rect. 5 1
58 98.39 radiation 1 90 > th dose independent rect. 4 1
68 98.39 radiation 1 90 > th dose dependent rect. 4 1
78 98.89 radiation 1 30 > th dose dependent rect. 18 12
91 99.68 temperature 20 90 < th dose dependent rect. 4 1
97 100.29 radiation 1 10 < th dose dependent rect. 6 8
99 100.34 radiation 1 10 < th dose independent rect. 13 1
109 100.34 radiation 1 10 < th dose dependent rect. 13 1
123 100.57 radiation 1 10 < th dose independent rect. 6 8
155 100.90 humidity 80 90 > th dose dependent rect. 12 1
156 100.94 humidity 80 90 > th dose independent rect. 12 1
177 101.43 humidity 80 270 < th dose dependent rect. 23 7
178 101.47 temperature 20 10 < th dose independent rect. 5 1
205 101.91 humidity 80 270 < th dose independent rect. 23 7
217 102.32 wind 1 90 < th dose dependent rect. 4 1
240 102.84 humidity 80 270 < th dose independent rect. 2 1
241 102.84 humidity 80 270 < th dose dependent rect. 2 1
281 103.08 wind 3 720 < th dose dependent rect. 19 1
290 103.22 humidity 80 10 > th dose independent rect. 14 1
300 103.35 wind 3 1440 < th dose dependent rect. 16 4
359 104.22 wind 1 90 < th dose independent rect. 4 1
360 104.24 temperature 25 10 < th dose dependent rect. 6 1
364 104.27 radiation 1 10 < th dose dependent rect. 6 1
377 104.40 wind 3 1440 < th dose dependent rect. 16 7
401 104.53 radiation 1 10 < th dose independent rect. 6 1
408 104.60 wind 3 720 < th dose independent rect. 18 1
409 104.60 wind 3 1440 < th dose dependent rect. 14 9
410 104.61 wind 1 1440 > th dose independent rect. 15 3
413 104.62 wind 3 720 < th dose dependent rect. 12 15
414 104.63 wind 3 1440 < th dose independent rect. 16 4
418 104.65 wind 3 720 < th dose dependent sin 17 NA
470 104.82 wind 3 1440 < th dose independent rect. 16 1
488 104.88 humidity 80 1440 < th dose dependent rect. 23 7
490 104.89 wind 3 720 < th dose dependent rect. 16 11
502 104.92 humidity 80 1440 < th dose dependent rect. 23 4
542 105.06 wind 1 4320 > th dose dependent rect. 17 3
597 105.17 humidity 80 1440 < th dose independent rect. 23 7
615 105.21 humidity 80 1440 < th dose independent rect. 23 4
672 105.30 temperature 25 90 < th dose dependent rect. 12 18
715 105.39 wind 1 90 < th dose dependent rect. 23 6
726 105.41 temperature 20 90 < th dose independent rect. 22 8
754 105.46 atmosphere 1005 90 > th dose independent rect. 5 1
763 105.48 radiation 20 10 < th dose independent rect. 14 1
775 105.49 humidity 80 1440 > th dose independent rect. 23 7
776 105.49 wind 1 90 < th dose dependent sin 7 NA
788 105.51 wind 1 720 < th dose independent rect. 16 7
798 105.53 wind 5 720 > th dose independent rect. 4 1
800 105.53 wind 5 720 > th dose dependent rect. 4 1
816 105.56 wind 9 90 > th dose independent rect. 10 1
851 105.59 wind 1 720 < th dose independent rect. 19 4
855 105.59 temperature 25 90 < th dose dependent rect. 22 8
878 105.63 temperature 20 90 < th dose independent rect. 4 20
879 105.63 wind 9 90 > th dose dependent rect. 10 1
885 105.63 wind 1 90 < th dose dependent rect. 22 11
939 105.71 wind 9 1440 > th dose independent rect. 18 1
953 105.73 wind 1 1440 > th dose independent rect. 22 1
957 105.73 wind 1 14400 < th dose independent rect. 17 13
991 105.75 temperature 25 30 < th dose dependent rect. 5 20