Os04g0423200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0423200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 433.18 | 0.978 | 4.81 | -3.45 | 2.01 | 3.41 | -6.15 | 5.17 | -0.781 | 12.4 | 19.54 | 3958 | -- | -- |
| 449.44 | 0.987 | 4.59 | -3.16 | 2.05 | 1.81 | -5.75 | -- | -0.516 | 12.5 | 21.7 | 2890 | -- | -- |
| 588.22 | 1.13 | 4.83 | -3.46 | 2.07 | 3.71 | -- | 5.51 | -0.758 | 12.5 | 19 | 4159 | -- | -- |
| 598.42 | 1.14 | 4.58 | -3.33 | 2.06 | 1.84 | -- | -- | -0.454 | 12.5 | 22 | 3081 | -- | -- |
| 847.53 | 1.36 | 4.85 | -3.48 | -- | 4.07 | -- | 5.47 | -0.774 | -- | 19.1 | 3859 | -- | -- |
| 540.56 | 1.09 | 4.75 | -4.13 | 2.13 | -- | -5.98 | -- | -1.18 | 12.5 | -- | -- | -- | -- |
| 693.79 | 1.23 | 4.77 | -4.35 | 2.15 | -- | -- | -- | -1.21 | 12.6 | -- | -- | -- | -- |
| 845.41 | 1.35 | 4.64 | -3.48 | -- | 2.07 | -- | -- | -0.547 | -- | 22 | 2407 | -- | -- |
| 643.99 | 1.18 | 4.47 | -- | 1.86 | 3.32 | -- | -- | -0.228 | 12.7 | 19.36 | 47112 | -- | -- |
| 982.86 | 1.46 | 4.81 | -4.43 | -- | -- | -- | -- | -1.25 | -- | -- | -- | -- | -- |
| 1193.1 | 1.62 | 4.66 | -- | 2.21 | -- | -- | -- | -0.723 | 12.7 | -- | -- | -- | -- |
| 889.7 | 1.39 | 4.44 | -- | -- | 3.75 | -- | -- | 0.391 | -- | 20.41 | 47520 | -- | -- |
| 1500.13 | 1.81 | 4.7 | -- | -- | -- | -- | -- | -0.754 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 431.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 2 | 431.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 5 | 433.98 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 11 | 434.75 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 33 | 435.36 | temperature | 20 | 4320 | < th | dose dependent | sin | 13 | NA |
| 60 | 435.72 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 89 | 436.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 107 | 436.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 176 | 437.48 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 236 | 437.93 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 247 | 438.00 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 256 | 438.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 276 | 438.47 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 328 | 439.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 10 |
| 332 | 439.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 337 | 439.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 352 | 439.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 375 | 440.20 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 387 | 440.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 394 | 440.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 395 | 440.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 397 | 440.53 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 439 | 440.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 445 | 440.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 528 | 441.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 531 | 441.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 543 | 441.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 563 | 441.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 579 | 441.88 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 605 | 442.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 627 | 442.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 628 | 442.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 699 | 442.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 713 | 442.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 742 | 442.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 755 | 442.82 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 828 | 443.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 22 |
| 834 | 443.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 892 | 443.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 906 | 443.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 981 | 443.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 17 |
| 995 | 443.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |