Os04g0422600 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0422600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.75	(0.0429)	R²	:	0.588
β₁	:	-3.06	(0.158)	R²_dD	:	0.358	R²_D	:	0.243
β₂	:	3.48	(0.194)	R²_dC	:	0.909	R²_C	:	-0.514
β₃	:	3.52	(0.214)	R²_dE	:	0.768	R²_E	:	-0.652
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.684	(0.0921)	R²_dN8	:	0.0691	R²_N8	:	-0.0209
σ	:	0.802
deviance	:	296.54
__

_____

C
peak time of C	:	4.25
E
wheather	:	radiation
threshold	:	0.3574
memory length	:	463
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	sin
peak or start time of G	:	13.1
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
288.72	0.798	5.77	-3.09	3.09	3.21	1.1	-1.13	-0.702	4.21	0.2519	437	12.1	--
288.4	0.791	5.76	-3	3.17	3.21	1.84	--	-0.7	4.26	0.1786	451	12.5	--
288.51	0.791	5.73	-3.16	3.34	3.47	--	-2.03	-0.692	4.34	0.4261	464	12.7	--
296.54	0.802	5.75	-3.06	3.48	3.52	--	--	-0.684	4.25	0.3574	463	13.1	--
358.14	0.881	5.82	-2.77	--	1.56	--	-0.432	-0.603	--	-32.69	3703	12.8	--
354.32	0.882	5.8	-2.81	1.58	--	0.346	--	-0.544	0.124	--	--	--	--
354.83	0.882	5.8	-2.83	1.58	--	--	--	-0.545	0.0899	--	--	--	--
339.11	0.858	5.8	-2.58	--	3.04	--	--	-0.642	--	0.17	2504	13.4	--
535.98	1.08	5.74	--	3.42	3.4	--	--	-0.427	4.12	2.218	492	13.2	--
512.65	1.06	5.76	-2.78	--	--	--	--	-0.522	--	--	--	--	--
565.25	1.11	5.73	--	1.55	--	--	--	-0.23	24	--	--	--	--
566.23	1.11	5.61	--	--	1.44	--	--	-0.133	--	67.22	39989	13	--
715.83	1.25	5.69	--	--	--	--	--	-0.214	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	290.41	temperature	10.0	270	> th	dose dependent	rect.	13	17
7	292.16	temperature	15.0	270	> th	dose dependent	rect.	6	7
26	298.57	temperature	15.0	270	> th	dose dependent	rect.	13	9
38	300.07	wind	7.0	14400	< th	dose independent	rect.	15	1
49	300.71	radiation	1.0	270	< th	dose dependent	rect.	5	21
58	301.22	temperature	25.0	270	> th	dose independent	rect.	13	6
63	301.69	wind	7.0	14400	> th	dose independent	rect.	15	1
71	302.40	atmosphere	1000.0	90	> th	dose independent	rect.	3	16
76	302.66	temperature	20.0	270	> th	dose independent	rect.	6	8
91	303.36	humidity	50.0	14400	> th	dose independent	rect.	4	5
106	304.16	wind	5.0	14400	> th	dose dependent	rect.	15	1
113	304.46	temperature	25.0	270	< th	dose independent	rect.	1	9
114	304.46	precipitation	0.1	90	< th	dose independent	rect.	3	16
115	304.46	precipitation	0.1	90	< th	dose dependent	rect.	3	16
120	304.50	temperature	15.0	10	> th	dose dependent	rect.	14	17
125	304.59	humidity	50.0	90	> th	dose dependent	rect.	19	8
144	305.17	radiation	1.0	270	< th	dose independent	rect.	8	18
145	305.17	radiation	1.0	270	< th	dose independent	rect.	6	20
147	305.19	wind	7.0	43200	< th	dose dependent	rect.	13	1
151	305.28	radiation	1.0	270	< th	dose dependent	rect.	13	13
166	305.60	temperature	15.0	270	> th	dose independent	rect.	14	16
167	305.63	radiation	1.0	270	< th	dose independent	rect.	12	14
190	306.17	wind	1.0	43200	> th	dose dependent	rect.	13	3
202	306.45	humidity	60.0	270	> th	dose dependent	rect.	17	8
203	306.47	humidity	50.0	270	> th	dose independent	rect.	8	17
209	306.64	wind	1.0	43200	> th	dose dependent	rect.	13	1
212	306.69	precipitation	0.1	270	< th	dose independent	rect.	14	16
213	306.69	precipitation	0.1	270	< th	dose dependent	rect.	14	16
222	306.88	humidity	90.0	270	< th	dose independent	rect.	13	8
233	307.17	humidity	50.0	90	> th	dose dependent	rect.	11	16
248	307.34	humidity	60.0	90	> th	dose dependent	rect.	17	10
249	307.35	radiation	30.0	270	< th	dose dependent	rect.	1	8
261	307.58	humidity	50.0	90	> th	dose dependent	rect.	9	18
263	307.65	radiation	10.0	270	< th	dose independent	rect.	1	7
273	307.81	humidity	50.0	270	> th	dose independent	rect.	6	8
279	307.90	wind	9.0	90	< th	dose dependent	rect.	19	8
294	308.05	wind	1.0	270	> th	dose independent	rect.	6	8
320	308.29	wind	9.0	90	< th	dose dependent	rect.	3	6
327	308.33	humidity	50.0	90	> th	dose dependent	rect.	3	6
346	308.62	radiation	1.0	270	> th	dose independent	sin	16	NA
362	308.77	wind	9.0	90	< th	dose independent	rect.	9	18
381	308.94	atmosphere	1015.0	270	< th	dose dependent	rect.	7	6
383	308.95	humidity	70.0	90	> th	dose independent	rect.	19	8
385	308.99	temperature	15.0	90	> th	dose independent	rect.	3	16
402	309.22	wind	1.0	43200	> th	dose dependent	rect.	13	11
404	309.24	wind	9.0	43200	< th	dose dependent	rect.	13	11
410	309.27	humidity	50.0	270	> th	dose dependent	rect.	1	7
422	309.34	precipitation	0.1	90	< th	dose independent	rect.	3	6
423	309.34	precipitation	0.1	90	< th	dose dependent	rect.	3	6
431	309.40	wind	5.0	90	< th	dose independent	rect.	19	8
448	309.49	temperature	30.0	90	< th	dose dependent	rect.	17	10
451	309.52	temperature	10.0	90	> th	dose independent	rect.	19	8
452	309.52	temperature	30.0	90	< th	dose independent	rect.	19	8
453	309.52	humidity	50.0	90	> th	dose independent	rect.	19	8
455	309.52	atmosphere	995.0	90	> th	dose independent	rect.	19	8
456	309.52	radiation	1.0	90	< th	dose independent	rect.	19	8
462	309.52	atmosphere	1015.0	90	< th	dose independent	rect.	3	16
463	309.52	radiation	1.0	90	< th	dose dependent	rect.	19	8
474	309.57	wind	9.0	90	< th	dose independent	rect.	3	6
475	309.57	temperature	10.0	90	> th	dose independent	rect.	3	6
477	309.57	humidity	50.0	90	> th	dose independent	rect.	3	6
478	309.57	atmosphere	995.0	90	> th	dose independent	rect.	3	6
479	309.57	atmosphere	1015.0	90	< th	dose independent	rect.	3	6
480	309.57	temperature	10.0	90	> th	dose independent	rect.	9	18
490	309.64	radiation	40.0	90	< th	dose independent	rect.	3	8
502	309.71	temperature	15.0	270	> th	dose dependent	sin	16	NA
505	309.74	wind	5.0	43200	< th	dose dependent	rect.	10	6
520	309.83	temperature	10.0	270	> th	dose dependent	rect.	3	2
528	309.91	radiation	40.0	90	< th	dose independent	rect.	3	6
569	310.12	wind	7.0	270	< th	dose independent	rect.	6	8
572	310.14	temperature	10.0	270	> th	dose dependent	rect.	1	6
607	310.31	humidity	70.0	90	> th	dose dependent	rect.	15	12
639	310.44	wind	1.0	43200	< th	dose dependent	rect.	9	3
648	310.46	temperature	10.0	270	> th	dose independent	rect.	6	8
649	310.46	atmosphere	995.0	270	> th	dose independent	rect.	6	8
650	310.46	atmosphere	1015.0	270	< th	dose independent	rect.	6	8
653	310.49	temperature	15.0	10	> th	dose dependent	rect.	14	9
655	310.51	radiation	40.0	90	< th	dose dependent	rect.	3	6
672	310.60	wind	3.0	43200	> th	dose independent	rect.	12	3
674	310.60	temperature	30.0	90	< th	dose dependent	rect.	15	12
684	310.65	wind	5.0	43200	< th	dose independent	rect.	13	6
711	310.73	wind	9.0	270	< th	dose dependent	rect.	1	6
727	310.79	temperature	10.0	90	> th	dose dependent	rect.	3	6
733	310.81	precipitation	0.1	270	< th	dose independent	rect.	6	8
736	310.81	precipitation	0.1	270	< th	dose dependent	rect.	6	8
748	310.87	temperature	30.0	90	< th	dose dependent	rect.	19	8
755	310.89	temperature	25.0	90	> th	dose dependent	rect.	24	13
761	310.91	temperature	25.0	90	> th	dose dependent	rect.	21	16
765	310.95	wind	5.0	43200	> th	dose independent	rect.	13	6
771	310.99	wind	3.0	43200	> th	dose independent	rect.	10	6
772	310.99	radiation	1.0	270	> th	dose independent	rect.	13	16
779	311.01	radiation	40.0	90	< th	dose dependent	rect.	3	8
782	311.02	radiation	1.0	270	> th	dose independent	rect.	13	6
795	311.03	wind	9.0	90	< th	dose independent	rect.	3	16
802	311.05	precipitation	0.1	270	< th	dose independent	rect.	1	7
803	311.05	precipitation	0.1	270	< th	dose dependent	rect.	1	7
812	311.10	temperature	25.0	270	> th	dose independent	rect.	8	3
832	311.18	humidity	50.0	90	> th	dose dependent	rect.	3	8
835	311.21	atmosphere	1015.0	90	< th	dose independent	rect.	9	18
845	311.25	wind	9.0	270	< th	dose independent	rect.	14	16
880	311.40	temperature	30.0	90	< th	dose dependent	rect.	13	14
884	311.42	wind	3.0	270	< th	dose independent	rect.	3	2
887	311.43	wind	3.0	43200	< th	dose independent	rect.	11	4
902	311.50	wind	9.0	270	< th	dose independent	rect.	1	7
903	311.50	temperature	10.0	270	> th	dose independent	rect.	1	7
906	311.50	humidity	50.0	270	> th	dose independent	rect.	1	7
908	311.50	atmosphere	995.0	270	> th	dose independent	rect.	1	7
909	311.50	atmosphere	1015.0	270	< th	dose independent	rect.	1	7
915	311.50	humidity	70.0	10	> th	dose dependent	rect.	10	17
932	311.56	wind	3.0	43200	< th	dose independent	rect.	10	6
934	311.56	atmosphere	1015.0	10	< th	dose dependent	rect.	8	6
987	311.69	wind	9.0	43200	< th	dose dependent	sin	18	NA
991	311.69	atmosphere	995.0	90	> th	dose dependent	rect.	3	16