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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0422500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0203) R2 : 2.75e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00478 (0.0426) R2dN8 : 3.55e-05 R2N8 : 2.75e-05
σ : 0.381
deviance : 66.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.32 0.377 3 -0.0166 0.0518 -0.272 -0.0717 1.41 -0.0121 13.4 1.1 16 -- --
65.96 0.378 2.99 0.0355 0.0464 -0.174 0.0482 -- 0.00292 13.3 1.084 16 -- --
64.33 0.374 3 -0.0174 0.0526 -0.274 -- 1.38 -0.0116 13.9 1.1 16 -- --
65.97 0.378 2.99 0.0374 0.0459 -0.17 -- -- 0.00303 12.7 1.1 16 -- --
64.49 0.374 3 -0.0166 -- -0.248 -- 1.36 -0.0132 -- 1.061 16 -- --
66.56 0.382 2.99 0.0608 0.0415 -- -0.135 -- 0.000789 7.41 -- -- -- --
66.6 0.382 2.99 0.0582 0.0422 -- -- -- 0.00129 8.47 -- -- -- --
66.09 0.379 2.99 0.0381 -- -0.153 -- -- 0.00228 -- 1 16 -- --
66.01 0.378 2.99 -- 0.0459 -0.175 -- -- -0.000335 12.7 1.099 16 -- --
66.7 0.382 2.99 0.0584 -- -- -- -- 0.0017 -- -- -- -- --
66.69 0.382 2.99 -- 0.0424 -- -- -- -0.00519 8.37 -- -- -- --
66.13 0.379 2.99 -- -- -0.158 -- -- -0.00187 -- 1.048 16 -- --
66.79 0.381 2.99 -- -- -- -- -- -0.00478 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.25 temperature 20.0 30 > th dose dependent rect. 2 1
2 58.28 temperature 20.0 30 > th dose independent rect. 2 1
5 58.33 atmosphere 1000.0 30 > th dose dependent rect. 2 1
6 58.34 atmosphere 1000.0 30 > th dose independent rect. 2 1
10 58.38 wind 3.0 30 < th dose independent rect. 2 1
11 58.39 wind 5.0 30 < th dose dependent rect. 2 1
17 58.40 temperature 10.0 30 > th dose independent rect. 2 1
19 58.40 temperature 30.0 30 < th dose independent rect. 2 1
20 58.40 humidity 50.0 30 > th dose independent rect. 2 1
24 58.40 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 58.40 radiation 1.0 30 < th dose independent rect. 2 1
31 58.40 precipitation 0.1 30 < th dose independent rect. 2 1
32 58.40 temperature 10.0 30 > th dose independent rect. 3 23
33 58.40 radiation 1.0 30 < th dose dependent rect. 2 1
38 58.40 precipitation 0.1 30 < th dose dependent rect. 2 1
40 58.41 humidity 50.0 30 > th dose dependent rect. 2 1
48 58.58 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 58.72 temperature 30.0 30 < th dose dependent rect. 2 1
51 58.74 wind 1.0 30 > th dose independent rect. 2 1
65 59.15 radiation 10.0 43200 < th dose dependent rect. 3 1
69 59.18 wind 9.0 1440 < th dose independent rect. 3 1
70 59.18 temperature 10.0 1440 > th dose independent rect. 3 1
73 59.18 temperature 30.0 1440 < th dose independent rect. 3 1
77 59.18 humidity 50.0 1440 > th dose independent rect. 3 1
87 59.18 atmosphere 995.0 1440 > th dose independent rect. 3 1
88 59.18 radiation 1.0 1440 < th dose independent rect. 3 1
108 59.18 temperature 10.0 1440 > th dose independent rect. 4 23
111 59.18 radiation 1.0 1440 < th dose dependent rect. 3 1
161 59.74 atmosphere 995.0 30 > th dose independent rect. 3 23
170 60.06 precipitation 0.1 30 < th dose independent rect. 3 23
171 60.06 precipitation 0.1 30 < th dose dependent rect. 3 23
179 60.52 wind 9.0 30 < th dose independent rect. 3 23
192 61.49 temperature 30.0 30 < th dose independent rect. 3 23
205 61.90 humidity 50.0 30 > th dose independent rect. 3 23
247 62.64 temperature 25.0 270 > th dose independent rect. 23 4
279 63.17 humidity 90.0 90 < th dose independent rect. 2 1
292 63.30 atmosphere 1005.0 90 < th dose independent rect. 18 1
306 63.43 temperature 30.0 720 > th dose dependent rect. 8 1
346 63.64 atmosphere 1015.0 30 < th dose independent rect. 3 23
384 63.79 temperature 30.0 720 < th dose independent rect. 3 8
402 63.88 temperature 30.0 720 > th dose independent rect. 8 1
441 63.94 wind 1.0 30 > th dose independent rect. 3 23
448 64.02 temperature 10.0 720 > th dose independent rect. 15 8
449 64.02 temperature 10.0 720 > th dose independent rect. 23 16
451 64.03 atmosphere 995.0 720 > th dose independent rect. 15 8
452 64.03 atmosphere 995.0 720 > th dose independent rect. 23 16
457 64.05 temperature 10.0 720 > th dose independent rect. 3 8
458 64.05 atmosphere 995.0 720 > th dose independent rect. 3 8
459 64.05 temperature 10.0 720 > th dose independent rect. 11 16
462 64.06 atmosphere 995.0 720 > th dose independent rect. 11 16
467 64.07 humidity 50.0 720 > th dose independent rect. 3 8
476 64.11 temperature 25.0 90 > th dose independent rect. 19 1
508 64.15 precipitation 0.1 720 < th dose independent rect. 15 8
510 64.15 precipitation 0.1 720 < th dose dependent rect. 15 8
581 64.35 wind 1.0 10 > th dose independent sin 10 NA
589 64.35 precipitation 0.1 720 < th dose independent rect. 11 16
595 64.35 precipitation 0.1 720 < th dose dependent rect. 11 16
607 64.39 wind 9.0 720 < th dose independent rect. 3 8
621 64.42 humidity 80.0 10 > th dose independent rect. 19 1
634 64.43 wind 1.0 10 > th dose independent rect. 13 23
636 64.44 temperature 30.0 720 < th dose independent rect. 3 6
668 64.50 wind 1.0 10 > th dose independent rect. 21 14
670 64.51 precipitation 0.1 720 < th dose independent rect. 15 22
671 64.51 temperature 25.0 90 > th dose dependent rect. 19 1
673 64.51 precipitation 0.1 720 < th dose dependent rect. 15 22
674 64.52 wind 3.0 10 < th dose independent rect. 19 1
695 64.58 atmosphere 995.0 720 > th dose independent rect. 13 2
703 64.59 precipitation 0.1 720 < th dose independent rect. 1 2
704 64.59 precipitation 0.1 720 < th dose independent rect. 13 2
706 64.59 radiation 10.0 270 < th dose dependent rect. 11 1
708 64.59 precipitation 0.1 720 < th dose dependent rect. 1 2
709 64.59 precipitation 0.1 720 < th dose dependent rect. 13 2
746 64.61 wind 9.0 720 < th dose independent rect. 1 2
748 64.61 temperature 10.0 720 > th dose independent rect. 1 2
749 64.61 temperature 10.0 720 > th dose independent rect. 13 2
750 64.61 temperature 30.0 720 < th dose independent rect. 1 2
751 64.61 humidity 50.0 720 > th dose independent rect. 1 2
754 64.61 atmosphere 995.0 720 > th dose independent rect. 1 2
755 64.61 atmosphere 1015.0 720 < th dose independent rect. 13 2
756 64.61 radiation 1.0 720 < th dose independent rect. 1 2
762 64.61 temperature 10.0 720 > th dose independent rect. 15 22
763 64.61 radiation 1.0 720 < th dose dependent rect. 1 2
770 64.62 wind 1.0 720 > th dose independent rect. 13 2
779 64.64 precipitation 0.1 1440 > th dose independent rect. 12 1
784 64.64 precipitation 0.1 1440 > th dose dependent rect. 12 1
799 64.67 wind 9.0 720 < th dose independent rect. 13 2
805 64.68 atmosphere 995.0 720 > th dose independent rect. 3 22
823 64.72 wind 1.0 10 > th dose independent rect. 20 23
829 64.73 atmosphere 995.0 720 > th dose independent rect. 15 22
835 64.75 wind 1.0 1440 > th dose independent rect. 17 1
836 64.75 wind 1.0 1440 < th dose independent rect. 17 1
846 64.77 temperature 30.0 720 < th dose independent rect. 1 8
847 64.77 wind 9.0 10 < th dose independent rect. 2 12
848 64.77 precipitation 0.1 720 < th dose independent rect. 15 12
851 64.77 temperature 10.0 720 > th dose dependent rect. 1 2
853 64.77 precipitation 0.1 720 < th dose dependent rect. 15 12
855 64.78 atmosphere 1000.0 10 > th dose independent rect. 14 12
856 64.78 radiation 40.0 10 < th dose independent rect. 14 12
857 64.78 wind 1.0 1440 < th dose dependent rect. 17 1
861 64.79 humidity 50.0 10 > th dose independent rect. 2 12
863 64.80 wind 1.0 10 > th dose independent no NA NA
876 64.82 wind 9.0 720 < th dose independent rect. 15 12
878 64.82 wind 9.0 720 < th dose independent rect. 15 22
883 64.83 precipitation 0.1 720 < th dose independent rect. 3 8
884 64.83 temperature 10.0 10 > th dose independent rect. 2 12
886 64.83 temperature 10.0 10 > th dose independent rect. 14 12
887 64.83 atmosphere 995.0 10 > th dose independent rect. 2 12
888 64.83 atmosphere 995.0 720 > th dose independent rect. 3 12
889 64.83 atmosphere 1015.0 10 < th dose independent rect. 2 12
890 64.83 precipitation 0.1 10 < th dose independent rect. 2 12
891 64.83 precipitation 0.1 10 < th dose independent rect. 14 12
895 64.83 precipitation 0.1 720 < th dose dependent rect. 3 8
896 64.83 precipitation 0.1 10 < th dose dependent rect. 2 12
897 64.83 precipitation 0.1 10 < th dose dependent rect. 14 12
898 64.84 humidity 50.0 720 > th dose independent rect. 13 2
902 64.84 wind 9.0 30 < th dose dependent rect. 3 23
909 64.85 temperature 10.0 720 > th dose independent rect. 3 12
910 64.85 temperature 10.0 720 > th dose independent rect. 15 12
913 64.85 precipitation 0.1 720 < th dose independent rect. 3 22
919 64.85 precipitation 0.1 720 < th dose dependent rect. 3 22
932 64.87 atmosphere 995.0 30 > th dose dependent rect. 3 23
941 64.88 wind 9.0 10 < th dose independent rect. 14 12
942 64.88 humidity 50.0 720 > th dose independent rect. 15 12
947 64.88 wind 1.0 30 > th dose dependent rect. 2 1
952 64.89 radiation 1.0 720 > th dose independent rect. 13 2
959 64.89 radiation 40.0 10 < th dose dependent rect. 14 12
978 64.92 wind 9.0 90 < th dose independent rect. 1 12
979 64.92 humidity 50.0 90 > th dose independent rect. 1 12