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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0422300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.99 (0.0813) R2 : 0.527
β1 : -8.58 (0.451) R2dD : 1.6 R2D : -0.361
β2 : 0.621 (0.154) R2dC : 0.0169 R2C : -0.0876
β3 : 1.46 (0.22) R2dE : 0.0612 R2E : -0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -16.9 (1.3) R2dD*E : 0.722 R2D*E : -0.875
γ1 : -0.673 (0.173) R2dN8 : 0.0372 R2N8 : -0.182
σ : 1.14
deviance : 596.98
__
_____
C
peak time of C : 8.11
E
wheather : temperature
threshold : 20.98
memory length : 4648
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
596.45 1.15 4.99 -8.58 0.62 1.44 -0.473 -16.8 -0.676 8.29 20.92 4706 -- --
807.36 1.33 4.32 -3.66 0.787 1.79 0.973 -- 0.599 5.22 -51.65 47520 -- --
596.98 1.14 4.99 -8.58 0.621 1.46 -- -16.9 -0.673 8.11 20.98 4648 -- --
801.34 1.32 4.29 -3.6 0.604 1.28 -- -- 0.77 7.71 -14.77 4179 -- --
618.01 1.16 5 -8.5 -- 1.41 -- -16.7 -0.651 -- 20.77 4609 -- --
834.5 1.35 4.27 -3.29 0.59 -- -0.465 -- 0.847 8.43 -- -- -- --
835.09 1.35 4.27 -3.31 0.596 -- -- -- 0.846 8.18 -- -- -- --
806.38 1.32 4.4 -4.29 -- 1.71 -- -- 0.314 -- -13.25 10069 -- --
784.18 1.3 4.03 -- 0.736 -2.55 -- -- 1.78 6.94 32.96 47520 -- --
854.68 1.37 4.28 -3.3 -- -- -- -- 0.853 -- -- -- -- --
1123.42 1.57 4.18 -- 0.581 -- -- -- 1.21 8.6 -- -- -- --
793.36 1.31 4.14 -- -- -2.54 -- -- 1.5 -- 33.83 47520 -- --
1142.43 1.58 4.2 -- -- -- -- -- 1.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 547.17 radiation 1.0 43200 < th dose independent rect. 18 10
3 547.23 radiation 1.0 43200 < th dose independent rect. 18 7
5 547.41 radiation 1.0 43200 < th dose independent rect. 18 1
12 552.37 temperature 20.0 43200 > th dose independent rect. 2 1
13 552.37 temperature 20.0 43200 < th dose independent rect. 2 1
15 552.43 temperature 20.0 43200 < th dose independent rect. 1 6
16 552.52 temperature 20.0 43200 < th dose independent rect. 23 8
17 552.56 temperature 20.0 43200 > th dose independent rect. 1 3
20 552.60 temperature 20.0 43200 > th dose independent rect. 22 9
28 552.80 temperature 20.0 43200 > th dose independent rect. 1 6
31 552.83 temperature 20.0 43200 > th dose independent rect. 5 2
34 552.86 temperature 20.0 43200 < th dose independent rect. 5 2
91 554.15 radiation 1.0 43200 > th dose independent rect. 12 5
94 554.24 radiation 1.0 43200 < th dose independent rect. 12 5
99 554.40 radiation 1.0 43200 < th dose dependent rect. 7 22
101 554.42 radiation 1.0 43200 < th dose dependent rect. 6 17
103 554.43 radiation 1.0 43200 < th dose dependent rect. 6 13
143 555.32 radiation 1.0 43200 > th dose independent rect. 18 1
173 555.62 radiation 1.0 43200 < th dose dependent sin 23 NA
180 555.80 radiation 1.0 43200 < th dose dependent rect. 18 23
182 555.82 radiation 1.0 43200 < th dose dependent rect. 18 11
220 557.05 temperature 20.0 43200 > th dose independent sin 9 NA
246 557.58 radiation 1.0 43200 < th dose dependent rect. 2 17
247 557.58 radiation 1.0 43200 < th dose dependent rect. 4 19
250 557.59 radiation 1.0 43200 < th dose dependent rect. 4 15
276 557.66 radiation 1.0 43200 < th dose dependent rect. 21 22
278 557.67 radiation 1.0 43200 < th dose dependent no NA NA
289 557.69 radiation 1.0 43200 < th dose dependent rect. 12 23
293 557.70 radiation 1.0 43200 < th dose dependent rect. 10 8
297 557.80 temperature 20.0 43200 < th dose independent sin 9 NA
412 559.09 radiation 1.0 43200 < th dose independent rect. 7 20
414 559.10 radiation 1.0 43200 < th dose independent rect. 7 18
418 559.13 radiation 1.0 43200 < th dose independent rect. 7 12
420 559.13 radiation 1.0 43200 < th dose independent rect. 7 14
457 559.34 radiation 1.0 43200 < th dose dependent rect. 15 14
465 559.45 precipitation 0.1 43200 < th dose independent rect. 9 1
466 559.45 precipitation 0.1 43200 < th dose dependent rect. 9 1
467 559.48 temperature 15.0 43200 > th dose dependent rect. 23 1
476 559.60 temperature 15.0 43200 > th dose dependent rect. 3 1
481 559.68 temperature 15.0 43200 > th dose dependent rect. 23 5
524 560.12 precipitation 0.1 43200 > th dose independent rect. 9 1
525 560.12 radiation 1.0 43200 > th dose independent rect. 6 11
527 560.12 precipitation 0.1 43200 > th dose dependent rect. 9 1
632 561.05 radiation 1.0 43200 < th dose dependent rect. 15 8
634 561.06 temperature 25.0 43200 < th dose independent rect. 11 1
696 561.32 radiation 1.0 43200 < th dose dependent rect. 2 8
703 561.33 radiation 1.0 43200 < th dose dependent rect. 4 6
730 561.50 temperature 25.0 43200 > th dose independent rect. 11 1
731 561.51 temperature 15.0 43200 > th dose dependent rect. 22 14
751 561.61 radiation 1.0 43200 < th dose dependent rect. 21 13
755 561.63 temperature 15.0 43200 > th dose dependent sin 9 NA
940 562.63 temperature 15.0 43200 > th dose dependent rect. 11 19
969 562.73 temperature 15.0 43200 > th dose dependent rect. 11 1