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Os04g0421700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAR1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.33 (0.0162) R2 : 0.325
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.582 (0.0393) R2dC : 0.326 R2C : 0.325
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00525 (0.0341) R2dN8 : 4.53e-05 R2N8 : -0.00167
σ : 0.306
deviance : 42.71
__
_____
C
peak time of C : 10.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27 0.244 9.25 0.973 0.59 0.0737 0.443 1.44 0.168 10.2 20 3360 -- --
28.88 0.25 9.26 0.903 0.623 -0.296 0.488 -- 0.184 10.3 15.3 24166 -- --
27.68 0.245 9.25 0.993 0.593 0.0621 -- 1.44 0.173 10.2 20 3222 -- --
28.7 0.25 9.29 1.01 0.582 -0.424 -- -- 0.167 10.2 13.81 47520 -- --
48.31 0.324 9.26 1.08 -- 0.0488 -- 1.47 0.17 -- 20.9 3123 -- --
30.55 0.259 9.31 0.642 0.587 -- 0.423 -- 0.0671 10.3 -- -- -- --
31.27 0.262 9.31 0.659 0.585 -- -- -- 0.0681 10.3 -- -- -- --
49.29 0.327 9.3 1.02 -- -0.444 -- -- 0.172 -- 13.99 47520 -- --
33.49 0.27 9.37 -- 0.607 0.463 -- -- -0.176 10.4 22 47520 -- --
52.1 0.337 9.33 0.65 -- -- -- -- 0.0667 -- -- -- -- --
42.71 0.306 9.33 -- 0.582 -- -- -- -0.00525 10.2 -- -- -- --
54.05 0.342 9.38 -- -- 0.441 -- -- -0.18 -- 26.21 47520 -- --
63.25 0.371 9.34 -- -- -- -- -- -0.00541 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.17 radiation 1 14400 < th dose independent rect. 18 12
2 25.23 wind 1 43200 > th dose independent rect. 7 5
3 25.24 radiation 1 14400 > th dose independent rect. 18 12
4 25.26 humidity 90 14400 > th dose independent rect. 21 1
6 25.29 humidity 90 14400 > th dose independent rect. 20 4
12 25.38 humidity 80 43200 > th dose independent rect. 18 1
16 25.44 humidity 80 43200 < th dose independent rect. 17 2
23 25.49 humidity 90 14400 < th dose independent rect. 23 2
26 25.51 humidity 90 14400 > th dose independent rect. 19 9
28 25.52 humidity 90 14400 < th dose independent rect. 21 7
30 25.52 humidity 90 14400 < th dose independent rect. 19 10
32 25.53 humidity 90 14400 < th dose independent rect. 21 10
33 25.54 humidity 90 14400 < th dose independent rect. 21 1
39 25.55 humidity 90 14400 > th dose independent rect. 23 1
56 25.59 wind 1 43200 < th dose independent rect. 8 4
69 25.61 radiation 1 14400 > th dose independent rect. 5 1
70 25.61 radiation 1 14400 < th dose independent rect. 5 1
91 25.65 radiation 1 14400 < th dose independent rect. 22 8
97 25.66 radiation 1 14400 < th dose independent rect. 24 6
141 25.73 humidity 90 14400 > th dose independent sin 12 NA
156 25.77 humidity 90 14400 < th dose independent sin 11 NA
167 25.79 temperature 20 1440 < th dose independent rect. 5 1
207 25.86 temperature 20 1440 < th dose independent rect. 4 3
214 25.89 temperature 20 1440 > th dose independent rect. 5 1
230 25.92 temperature 20 1440 > th dose independent rect. 4 3
240 25.93 wind 3 43200 < th dose dependent rect. 11 2
241 25.93 humidity 90 14400 > th dose dependent rect. 23 2
266 25.98 wind 1 43200 < th dose independent rect. 11 1
271 25.98 wind 1 43200 < th dose dependent rect. 8 4
283 26.01 atmosphere 1015 43200 > th dose independent rect. 12 1
284 26.01 atmosphere 1015 43200 < th dose independent rect. 12 1
299 26.03 radiation 1 4320 > th dose independent rect. 18 1
325 26.04 wind 3 43200 < th dose dependent rect. 6 10
326 26.05 atmosphere 1015 43200 > th dose independent rect. 4 1
327 26.05 atmosphere 1015 43200 < th dose independent rect. 4 1
343 26.06 atmosphere 1015 43200 < th dose independent rect. 10 6
360 26.08 wind 1 43200 > th dose independent rect. 11 1
384 26.10 atmosphere 1015 43200 > th dose independent rect. 23 6
412 26.12 wind 3 43200 < th dose independent rect. 11 4
428 26.13 humidity 90 43200 < th dose independent rect. 6 1
475 26.15 wind 1 43200 < th dose independent rect. 2 1
506 26.17 wind 3 43200 < th dose independent rect. 10 6
529 26.18 wind 9 43200 > th dose dependent rect. 12 1
533 26.19 wind 3 43200 > th dose independent rect. 11 4
546 26.19 atmosphere 1015 43200 > th dose independent rect. 21 16
550 26.19 atmosphere 1015 43200 < th dose independent rect. 21 17
556 26.19 atmosphere 1015 43200 < th dose independent rect. 10 19
563 26.19 atmosphere 1015 43200 > th dose dependent rect. 1 1
569 26.20 wind 1 43200 > th dose independent rect. 2 1
584 26.20 atmosphere 1015 43200 < th dose independent rect. 21 15
585 26.20 atmosphere 1015 43200 < th dose independent rect. 23 15
613 26.20 radiation 1 14400 < th dose dependent rect. 24 6
626 26.21 radiation 1 4320 < th dose independent rect. 18 8
632 26.21 atmosphere 1015 43200 > th dose independent rect. 23 13
633 26.21 atmosphere 1015 43200 > th dose independent rect. 1 14
638 26.21 atmosphere 1015 43200 < th dose independent rect. 1 14
682 26.22 atmosphere 1015 43200 > th dose independent sin 7 NA
685 26.22 atmosphere 1015 43200 < th dose independent sin 7 NA
702 26.22 atmosphere 1015 43200 > th dose independent rect. 2 12
731 26.22 atmosphere 1015 43200 > th dose independent rect. 9 20
745 26.22 radiation 1 14400 < th dose dependent rect. 4 2
756 26.23 atmosphere 1015 43200 > th dose independent sin 3 NA
761 26.23 atmosphere 1015 43200 < th dose independent sin 4 NA
835 26.24 atmosphere 1015 43200 > th dose independent sin 1 NA
838 26.24 atmosphere 1015 43200 < th dose independent sin 23 NA
843 26.24 atmosphere 1015 43200 < th dose independent no NA NA
844 26.24 radiation 1 4320 < th dose independent rect. 18 1
869 26.24 atmosphere 1015 43200 < th dose independent rect. 9 13
894 26.24 atmosphere 1015 43200 < th dose independent rect. 1 21
911 26.24 atmosphere 1010 43200 > th dose dependent rect. 12 1
922 26.25 atmosphere 1015 43200 > th dose independent rect. 21 1
923 26.25 atmosphere 1015 43200 < th dose independent rect. 21 1