Os04g0420900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase.
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Os04g0420900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 350.36 | 0.879 | 5.46 | 1.55 | 0.352 | -1.78 | -0.388 | -7.16 | 0.124 | 22.7 | 9.96 | 4301 | -- | -- |
| 380.1 | 0.908 | 5.31 | 1.18 | 0.41 | -1.36 | -0.247 | -- | 0.277 | 22.7 | 21.62 | 4467 | -- | -- |
| 350.97 | 0.873 | 5.46 | 1.57 | 0.355 | -1.77 | -- | -7.13 | 0.127 | 22.6 | 9.96 | 4302 | -- | -- |
| 378.32 | 0.906 | 5.3 | 1.02 | 0.397 | -1.51 | -- | -- | 0.201 | 22.1 | 20.05 | 4381 | -- | -- |
| 357.87 | 0.881 | 5.44 | 1.6 | -- | -1.86 | -- | -7.09 | 0.13 | -- | 9.86 | 4237 | -- | -- |
| 422.93 | 0.964 | 5.25 | 1.11 | 0.426 | -- | -0.136 | -- | 0.414 | 23.1 | -- | -- | -- | -- |
| 423.01 | 0.963 | 5.25 | 1.12 | 0.427 | -- | -- | -- | 0.414 | 23.1 | -- | -- | -- | -- |
| 383.84 | 0.912 | 5.29 | 1.04 | -- | -1.45 | -- | -- | 0.234 | -- | 20.09 | 4054 | -- | -- |
| 403.94 | 0.936 | 5.3 | -- | 0.405 | -1.51 | -- | -- | 0.203 | 23.2 | 20 | 4459 | -- | -- |
| 434.38 | 0.974 | 5.24 | 1.13 | -- | -- | -- | -- | 0.418 | -- | -- | -- | -- | -- |
| 456.02 | 0.999 | 5.27 | -- | 0.438 | -- | -- | -- | 0.289 | 23.3 | -- | -- | -- | -- |
| 408.93 | 0.942 | 5.29 | -- | -- | -1.5 | -- | -- | 0.146 | -- | 20.01 | 4067 | -- | -- |
| 468.01 | 1.01 | 5.26 | -- | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 336.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 2 | 340.55 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 342.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 4 | 343.49 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 6 | 343.86 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 8 |
| 8 | 344.01 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 18 | 344.22 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 51 | 344.44 | humidity | 70 | 43200 | < th | dose dependent | sin | 18 | NA |
| 56 | 344.47 | humidity | 60 | 43200 | > th | dose independent | sin | 19 | NA |
| 60 | 344.50 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 84 | 344.63 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 100 | 344.71 | humidity | 70 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 155 | 344.98 | humidity | 60 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 160 | 345.00 | humidity | 70 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 217 | 345.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 263 | 345.46 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 19 |
| 305 | 345.71 | humidity | 60 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 370 | 346.00 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 408 | 346.16 | humidity | 70 | 43200 | < th | dose independent | sin | 11 | NA |
| 457 | 346.36 | humidity | 60 | 43200 | < th | dose independent | sin | 18 | NA |
| 483 | 346.48 | humidity | 60 | 43200 | > th | dose independent | no | NA | NA |
| 530 | 346.82 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 594 | 347.17 | radiation | 10 | 4320 | < th | dose independent | rect. | 10 | 23 |
| 618 | 347.28 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 623 | 347.30 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 625 | 347.31 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 677 | 347.55 | humidity | 70 | 43200 | < th | dose dependent | no | NA | NA |
| 695 | 347.67 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 723 | 347.80 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 749 | 347.93 | wind | 7 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 772 | 348.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 843 | 348.36 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 880 | 348.49 | humidity | 70 | 43200 | > th | dose independent | sin | 11 | NA |
| 927 | 348.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |