Os04g0420500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0420500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.76 | 0.448 | 5.21 | -1.05 | 0.275 | -2.7 | 0.148 | -4.91 | 0.0311 | 5.01 | 21.12 | 5404 | -- | -- |
| 102.17 | 0.471 | 5.37 | -1.24 | 0.114 | -1.56 | 0.0727 | -- | -0.153 | 4.5 | 23.79 | 1234 | -- | -- |
| 90.75 | 0.444 | 5.21 | -1.06 | 0.282 | -2.75 | -- | -5.01 | 0.0439 | 4.92 | 20.96 | 5455 | -- | -- |
| 97.07 | 0.459 | 5.36 | -1.03 | 0.246 | -1.11 | -- | -- | -0.0734 | 6.02 | 25 | 1144 | -- | -- |
| 94.66 | 0.453 | 5.21 | -1.05 | -- | -2.82 | -- | -5.16 | 0.039 | -- | 20.9 | 5449 | -- | -- |
| 110.58 | 0.493 | 5.3 | -0.685 | 0.3 | -- | 0.178 | -- | 0.201 | 4.6 | -- | -- | -- | -- |
| 110.66 | 0.493 | 5.3 | -0.686 | 0.302 | -- | -- | -- | 0.2 | 4.73 | -- | -- | -- | -- |
| 100.22 | 0.466 | 5.35 | -0.983 | -- | -1.03 | -- | -- | -0.0108 | -- | 25 | 1185 | -- | -- |
| 118.21 | 0.506 | 5.3 | -- | 0.283 | -0.558 | -- | -- | 0.18 | 5.85 | 24.7 | 886 | -- | -- |
| 115.5 | 0.502 | 5.3 | -0.675 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 123.07 | 0.519 | 5.28 | -- | 0.29 | -- | -- | -- | 0.276 | 4.8 | -- | -- | -- | -- |
| 122.05 | 0.515 | 5.31 | -- | -- | -0.564 | -- | -- | 0.181 | -- | 25.1 | 1114 | -- | -- |
| 127.51 | 0.527 | 5.29 | -- | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.60 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 3 | 88.67 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 4 | 88.68 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 37 | 89.21 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 40 | 89.22 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 87 | 89.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 90 | 89.61 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 92 | 89.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 141 | 90.42 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 149 | 90.51 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 154 | 90.53 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 167 | 90.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 171 | 90.70 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 20 | NA |
| 182 | 90.75 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 4 |
| 190 | 90.78 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 208 | 90.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 215 | 90.93 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 20 | NA |
| 255 | 91.14 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 19 | NA |
| 279 | 91.26 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 324 | 91.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 420 | 91.73 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 432 | 91.77 | temperature | 20 | 4320 | < th | dose dependent | rect. | 13 | 17 |
| 474 | 91.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 494 | 91.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 530 | 92.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 10 |
| 534 | 92.02 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 542 | 92.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 7 |
| 547 | 92.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 553 | 92.05 | temperature | 20 | 4320 | < th | dose dependent | sin | 11 | NA |
| 576 | 92.10 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 584 | 92.11 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 594 | 92.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 605 | 92.14 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 11 |
| 610 | 92.15 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 631 | 92.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 640 | 92.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 709 | 92.30 | humidity | 50 | 4320 | < th | dose dependent | sin | 13 | NA |
| 725 | 92.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 15 |
| 791 | 92.43 | wind | 5 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 798 | 92.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 809 | 92.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 857 | 92.50 | humidity | 50 | 4320 | < th | dose independent | sin | 19 | NA |