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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0420400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0387) R2 : 0.894
β1 : 1.62 (0.141) R2dD : 0.0319 R2D : -0.00363
β2 : 4.03 (0.213) R2dC : 0.384 R2C : -1.16
β3 : -10.7 (0.244) R2dE : 2.02 R2E : 0.449
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.749 (0.0822) R2dN8 : 0.0243 R2N8 : 0.00877
σ : 0.72
deviance : 238.93
__
_____
C
peak time of C : 6.55
E
wheather : radiation
threshold : 39.27
memory length : 738
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 14.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.66 0.717 6.16 1.64 3.58 -10.4 -2.95 2.09 0.671 6.48 35.02 728 15 14.2
233.9 0.712 6.15 1.62 3.73 -10.4 -1.54 -- 0.696 6.58 37.02 730 15.1 14.3
241.76 0.724 6.13 1.64 3.12 -9.48 -- -0.323 0.731 7.03 34.94 730 15 14.4
238.93 0.72 6.13 1.62 4.03 -10.7 -- -- 0.749 6.55 39.27 738 15.1 14.3
270.28 0.766 6.23 1.69 -- -6.81 -- 0.151 0.716 -- 28.57 663 14.9 13.4
322.2 0.842 6.25 1.58 5.79 -- 0.273 -- 0.882 15.8 -- -- -- --
322.42 0.841 6.25 1.59 5.79 -- -- -- 0.884 15.8 -- -- -- --
267.62 0.762 6.23 1.59 -- -6.67 -- -- 0.693 -- 23.23 648 14.8 13.6
306.25 0.815 6.18 -- 4.14 -10.7 -- -- 0.579 6.44 44.82 740 15.1 14.4
2170.97 2.18 6.24 1.35 -- -- -- -- 0.729 -- -- -- -- --
388.72 0.922 6.29 -- 5.76 -- -- -- 0.707 15.8 -- -- -- --
331.34 0.848 6.27 -- -- -6.68 -- -- 0.515 -- 23.99 653 14.7 13.7
2218.73 2.2 6.27 -- -- -- -- -- 0.58 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 237.34 radiation 30.0 720 < th dose dependent rect. 15 14
2 238.40 radiation 10.0 720 < th dose dependent rect. 15 14
5 238.75 radiation 30.0 720 < th dose dependent rect. 15 6
8 240.08 precipitation 0.1 720 < th dose independent rect. 5 20
9 240.08 precipitation 0.1 720 < th dose dependent rect. 5 20
10 240.24 radiation 1.0 720 > th dose independent rect. 13 19
12 240.68 humidity 50.0 270 > th dose dependent rect. 16 13
16 241.35 radiation 1.0 720 < th dose independent rect. 1 19
20 242.28 precipitation 0.1 270 < th dose independent rect. 13 12
21 242.28 precipitation 0.1 270 < th dose dependent rect. 13 12
25 243.59 radiation 10.0 720 < th dose independent rect. 15 14
28 244.09 radiation 1.0 720 > th dose independent rect. 13 4
34 245.08 humidity 50.0 270 > th dose independent rect. 16 13
38 245.28 radiation 1.0 720 < th dose dependent rect. 1 19
46 246.43 radiation 1.0 90 < th dose independent rect. 3 20
47 246.63 radiation 1.0 90 < th dose dependent rect. 3 20
63 248.47 precipitation 0.1 720 < th dose independent rect. 13 4
64 248.47 precipitation 0.1 720 < th dose dependent rect. 13 4
101 250.46 radiation 10.0 720 < th dose independent rect. 15 6
110 250.89 precipitation 0.1 720 < th dose independent rect. 14 10
111 250.89 precipitation 0.1 720 < th dose dependent rect. 14 10
119 251.52 temperature 30.0 270 < th dose independent rect. 16 13
129 252.24 precipitation 0.1 720 < th dose independent rect. 21 20
130 252.24 precipitation 0.1 720 < th dose dependent rect. 21 20
155 253.53 temperature 15.0 720 > th dose independent rect. 1 4
168 254.14 temperature 15.0 270 > th dose independent rect. 1 12
176 254.66 atmosphere 1015.0 720 < th dose independent rect. 1 4
191 255.66 wind 9.0 720 < th dose independent rect. 13 4
192 255.67 precipitation 0.1 720 < th dose independent rect. 5 12
193 255.67 precipitation 0.1 720 < th dose dependent rect. 5 12
219 256.61 wind 9.0 270 < th dose independent rect. 13 12
239 257.34 humidity 50.0 720 > th dose dependent rect. 1 4
249 257.56 radiation 1.0 720 > th dose dependent rect. 15 1
255 257.79 radiation 1.0 720 > th dose dependent rect. 14 3
275 258.28 wind 9.0 720 < th dose independent rect. 5 20
276 258.29 precipitation 0.1 720 < th dose independent rect. 4 14
277 258.29 precipitation 0.1 720 < th dose dependent rect. 4 14
280 258.34 wind 9.0 270 < th dose independent rect. 1 12
283 258.41 humidity 90.0 720 < th dose independent rect. 13 4
301 258.83 radiation 1.0 720 > th dose dependent rect. 14 17
303 258.90 radiation 1.0 720 < th dose independent rect. 17 3
310 258.99 humidity 50.0 720 > th dose independent rect. 17 4
341 259.42 humidity 50.0 270 > th dose dependent rect. 24 21
346 259.48 temperature 10.0 720 > th dose independent rect. 13 4
347 259.48 atmosphere 1015.0 720 < th dose independent rect. 13 4
348 259.48 temperature 10.0 720 > th dose independent rect. 17 20
352 259.56 atmosphere 995.0 720 > th dose independent rect. 17 20
353 259.57 radiation 1.0 720 < th dose independent rect. 1 4
361 259.63 temperature 10.0 270 > th dose independent rect. 13 12
362 259.63 atmosphere 995.0 270 > th dose independent rect. 1 12
363 259.63 atmosphere 1015.0 270 < th dose independent rect. 1 12
368 259.75 radiation 10.0 720 < th dose dependent rect. 1 4
383 259.95 temperature 10.0 720 > th dose dependent rect. 13 4
387 259.98 temperature 30.0 720 < th dose independent rect. 1 4
388 259.98 humidity 50.0 720 > th dose independent rect. 1 4
391 259.98 atmosphere 995.0 720 > th dose independent rect. 1 4
396 259.98 temperature 10.0 720 > th dose independent rect. 5 20
398 260.04 radiation 1.0 720 < th dose dependent sin 0 NA
399 260.09 wind 9.0 720 < th dose independent rect. 1 4
401 260.10 radiation 10.0 720 < th dose dependent sin 14 NA
413 260.32 wind 9.0 720 < th dose independent rect. 21 20
427 260.69 wind 7.0 720 < th dose independent rect. 22 10
443 261.10 humidity 60.0 270 > th dose dependent rect. 17 3
451 261.22 atmosphere 995.0 720 > th dose independent rect. 17 4
473 261.63 wind 9.0 720 < th dose independent rect. 5 12
492 261.74 temperature 10.0 720 > th dose independent rect. 17 4
496 261.74 temperature 10.0 720 > th dose independent rect. 21 20
497 261.75 humidity 80.0 720 < th dose independent rect. 15 1
499 261.78 humidity 50.0 270 > th dose independent rect. 24 21
503 261.89 humidity 70.0 10 > th dose independent rect. 18 12
506 261.94 wind 9.0 720 < th dose independent rect. 20 14
507 261.94 precipitation 0.1 720 < th dose independent rect. 13 20
509 261.94 precipitation 0.1 720 < th dose dependent rect. 13 20
517 261.98 precipitation 0.1 720 < th dose independent rect. 20 14
520 261.98 precipitation 0.1 720 < th dose dependent rect. 20 14
523 262.03 wind 7.0 720 < th dose independent rect. 5 4
524 262.04 atmosphere 1015.0 720 < th dose independent rect. 2 10
534 262.16 temperature 10.0 720 > th dose independent rect. 5 4
535 262.16 humidity 50.0 720 > th dose independent rect. 5 4
536 262.16 atmosphere 995.0 720 > th dose independent rect. 5 4
537 262.16 atmosphere 1015.0 720 < th dose independent rect. 5 4
538 262.16 temperature 10.0 720 > th dose independent rect. 9 20
540 262.17 atmosphere 995.0 720 > th dose independent rect. 17 12
543 262.21 precipitation 0.1 270 < th dose independent rect. 1 12
544 262.21 precipitation 0.1 270 < th dose dependent rect. 1 12
548 262.35 temperature 10.0 720 > th dose independent rect. 22 10
549 262.35 temperature 30.0 720 < th dose independent rect. 22 10
550 262.35 humidity 50.0 720 > th dose independent rect. 22 10
552 262.35 atmosphere 995.0 720 > th dose independent rect. 22 10
553 262.35 temperature 10.0 720 > th dose independent rect. 8 14
557 262.45 atmosphere 1015.0 720 < th dose independent rect. 17 4
560 262.49 precipitation 0.1 720 < th dose independent rect. 5 4
561 262.49 precipitation 0.1 720 < th dose dependent rect. 5 4
573 262.85 temperature 10.0 720 > th dose independent rect. 10 10
574 262.85 atmosphere 1015.0 720 < th dose independent rect. 10 10
575 262.85 temperature 10.0 720 > th dose independent rect. 20 14
576 262.85 atmosphere 995.0 720 > th dose independent rect. 20 14
579 262.91 precipitation 0.1 720 < th dose independent rect. 22 10
580 262.91 precipitation 0.1 720 < th dose dependent rect. 22 10
581 262.94 temperature 10.0 270 > th dose independent rect. 5 11
582 262.94 atmosphere 1015.0 270 < th dose independent rect. 5 11
583 262.94 temperature 10.0 270 > th dose independent rect. 16 13
586 262.96 atmosphere 995.0 720 > th dose independent rect. 18 10
602 263.24 humidity 50.0 270 > th dose independent rect. 1 11
606 263.32 atmosphere 1015.0 720 < th dose independent rect. 24 14
633 263.55 humidity 50.0 720 > th dose independent rect. 20 14
650 263.70 wind 1.0 720 > th dose independent rect. 13 4
654 263.77 radiation 40.0 720 < th dose independent rect. 22 10
660 263.85 wind 9.0 720 < th dose independent rect. 14 10
673 263.97 humidity 60.0 270 > th dose dependent rect. 18 1
681 264.13 humidity 70.0 270 > th dose independent rect. 17 3
697 264.35 humidity 50.0 720 > th dose independent rect. 17 19
702 264.57 radiation 10.0 720 < th dose independent sin 14 NA
724 264.93 atmosphere 995.0 270 > th dose independent rect. 5 11
734 265.04 wind 9.0 720 < th dose independent rect. 12 6
748 265.23 radiation 1.0 720 > th dose independent sin 13 NA
749 265.29 precipitation 0.1 720 < th dose independent rect. 1 4
751 265.29 precipitation 0.1 720 < th dose dependent rect. 1 4
752 265.29 humidity 50.0 90 > th dose dependent rect. 3 19
763 265.42 wind 9.0 270 < th dose independent rect. 16 13
793 265.64 wind 9.0 720 < th dose independent rect. 17 4
809 265.73 wind 9.0 90 < th dose dependent rect. 3 10
817 265.80 temperature 10.0 720 > th dose dependent rect. 1 4
820 265.82 wind 9.0 720 < th dose independent rect. 17 20
837 266.03 wind 9.0 720 < th dose independent rect. 4 14
850 266.20 temperature 10.0 720 > th dose independent rect. 18 10
851 266.20 humidity 50.0 720 > th dose independent rect. 18 10
852 266.20 radiation 20.0 720 < th dose independent rect. 18 10
855 266.20 temperature 10.0 720 > th dose independent rect. 4 14
856 266.20 atmosphere 1015.0 720 < th dose independent rect. 4 14
861 266.24 atmosphere 995.0 720 > th dose independent rect. 18 18
874 266.37 humidity 90.0 270 < th dose independent rect. 21 3
883 266.49 temperature 10.0 270 > th dose dependent rect. 22 2
902 266.66 temperature 15.0 90 > th dose independent rect. 3 19
903 266.71 temperature 15.0 720 > th dose independent rect. 24 14
914 266.94 temperature 15.0 720 > th dose independent rect. 9 4
921 267.03 wind 9.0 14400 < th dose independent rect. 24 3
924 267.10 precipitation 0.1 30 < th dose independent rect. 6 21
925 267.10 precipitation 0.1 30 < th dose dependent rect. 6 21
940 267.26 wind 5.0 90 < th dose independent rect. 22 5
942 267.27 radiation 1.0 90 > th dose independent rect. 6 23
944 267.29 temperature 10.0 30 > th dose dependent rect. 23 4
955 267.41 radiation 1.0 90 > th dose independent rect. 6 13
969 267.42 atmosphere 1015.0 720 < th dose independent rect. 1 20
994 267.51 temperature 30.0 720 < th dose independent rect. 5 4