Os04g0419900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase.
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Os04g0419900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 386.7 | 0.924 | 7.61 | 1.68 | 1.57 | -3.29 | -0.939 | 5.33 | -0.399 | 2.99 | 25.72 | 1064 | -- | -- |
| 393.56 | 0.924 | 7.75 | 0.551 | 1.53 | -2.78 | -0.749 | -- | -0.676 | 3.06 | 25.72 | 1037 | -- | -- |
| 389.6 | 0.919 | 7.6 | 1.68 | 1.58 | -3.29 | -- | 5.17 | -0.391 | 2.98 | 25.68 | 1065 | -- | -- |
| 395.25 | 0.926 | 7.75 | 0.569 | 1.55 | -2.8 | -- | -- | -0.657 | 3 | 25.71 | 1045 | -- | -- |
| 484.37 | 1.03 | 7.59 | 1.85 | -- | -3.18 | -- | 5.36 | -0.282 | -- | 25.54 | 1847 | -- | -- |
| 626.58 | 1.17 | 7.78 | -0.199 | 1.34 | -- | -1.32 | -- | -0.831 | 4.53 | -- | -- | -- | -- |
| 631.17 | 1.18 | 7.77 | -0.189 | 1.33 | -- | -- | -- | -0.824 | 4.62 | -- | -- | -- | -- |
| 501 | 1.04 | 7.73 | 0.646 | -- | -2.65 | -- | -- | -0.547 | -- | 25.4 | 1864 | -- | -- |
| 403.16 | 0.935 | 7.76 | -- | 1.54 | -2.67 | -- | -- | -0.746 | 3.05 | 25.89 | 1041 | -- | -- |
| 725.48 | 1.26 | 7.78 | -0.138 | -- | -- | -- | -- | -0.789 | -- | -- | -- | -- | -- |
| 632.12 | 1.18 | 7.77 | -- | 1.33 | -- | -- | -- | -0.802 | 4.63 | -- | -- | -- | -- |
| 511.17 | 1.05 | 7.75 | -- | -- | -2.5 | -- | -- | -0.635 | -- | 25.55 | 1878 | -- | -- |
| 725.98 | 1.26 | 7.78 | -- | -- | -- | -- | -- | -0.773 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 399.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 2 | 401.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 6 | 402.50 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 9 | 403.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 13 | 404.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 49 | 404.96 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 62 | 405.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 87 | 405.66 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 101 | 406.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 131 | 406.51 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 223 | 409.06 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 251 | 410.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 268 | 410.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 362 | 413.30 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 367 | 413.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 392 | 414.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 402 | 414.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 406 | 414.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 422 | 415.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 431 | 415.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 437 | 415.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 438 | 415.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 444 | 415.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 467 | 416.11 | temperature | 30 | 1440 | < th | dose independent | sin | 0 | NA |
| 469 | 416.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 501 | 416.28 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 514 | 416.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 527 | 416.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 531 | 416.38 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 595 | 416.71 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 629 | 417.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 631 | 417.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 669 | 417.65 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 680 | 417.99 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 697 | 418.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 711 | 418.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 716 | 418.26 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 747 | 418.76 | temperature | 30 | 1440 | > th | dose independent | sin | 23 | NA |
| 748 | 418.78 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 846 | 418.87 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 872 | 419.20 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 873 | 419.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 878 | 419.26 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 882 | 419.33 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 902 | 419.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 919 | 419.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 930 | 420.22 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 939 | 420.30 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 985 | 420.56 | wind | 9 | 43200 | < th | dose independent | sin | 18 | NA |