Os04g0419800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0419800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.63 | 0.411 | 7.65 | 1.34 | 0.588 | 1.6 | 0.791 | 0.0159 | 0.153 | 13.4 | 10.8 | 677 | -- | -- |
| 76.63 | 0.408 | 7.65 | 1.34 | 0.567 | 1.61 | 0.783 | -- | 0.152 | 13.3 | 11.17 | 652 | -- | -- |
| 79.03 | 0.414 | 7.66 | 1.32 | 0.567 | 1.6 | -- | -0.303 | 0.145 | 13.5 | 8.883 | 651 | -- | -- |
| 79.1 | 0.414 | 7.65 | 1.37 | 0.534 | 1.61 | -- | -- | 0.158 | 13.4 | 9.175 | 613 | -- | -- |
| 80.27 | 0.417 | 7.64 | 1.52 | -- | 1.85 | -- | 1.09 | 0.179 | -- | 1.164 | 210 | -- | -- |
| 108.29 | 0.488 | 7.61 | 1.75 | 0.644 | -- | 0.761 | -- | 0.397 | 15.7 | -- | -- | -- | -- |
| 109.94 | 0.491 | 7.6 | 1.76 | 0.652 | -- | -- | -- | 0.402 | 15.9 | -- | -- | -- | -- |
| 81.11 | 0.419 | 7.66 | 1.35 | -- | 1.88 | -- | -- | 0.134 | -- | 3.333 | 219 | -- | -- |
| 92.62 | 0.448 | 7.69 | -- | 0.655 | 1.64 | -- | -- | -0.229 | 15.5 | 6.842 | 40871 | -- | -- |
| 133.23 | 0.539 | 7.6 | 1.73 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 191.61 | 0.648 | 7.65 | -- | 0.618 | -- | -- | -- | 0.206 | 16 | -- | -- | -- | -- |
| 115.92 | 0.501 | 7.75 | -- | -- | 1.63 | -- | -- | -0.276 | -- | -0.3208 | 40791 | -- | -- |
| 212.5 | 0.68 | 7.65 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 2 | 72.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 3 | 72.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 31 | 73.87 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 77 | 75.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 87 | 75.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 88 | 75.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 108 | 75.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 146 | 76.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 181 | 76.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 185 | 76.73 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 315 | 77.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 21 |
| 324 | 77.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 336 | 77.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 338 | 77.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 344 | 77.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 346 | 77.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 378 | 77.92 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 380 | 77.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 386 | 77.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 17 |
| 393 | 77.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 21 |
| 497 | 78.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 501 | 78.28 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 508 | 78.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 514 | 78.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 543 | 78.34 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 640 | 78.45 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 641 | 78.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 664 | 78.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 674 | 78.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 693 | 78.51 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 3 |
| 695 | 78.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 12 |
| 721 | 78.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 762 | 78.59 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 763 | 78.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 840 | 78.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 859 | 78.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 942 | 78.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 953 | 78.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 957 | 78.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 9 |