Os04g0419700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like protein kinase.
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Os04g0419700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor-like protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.57 | 0.599 | 9.86 | -0.895 | 0.91 | -2.2 | 1.43 | -0.611 | -0.353 | 7.77 | 78.05 | 1355 | -- | -- |
| 161.28 | 0.591 | 9.86 | -0.978 | 0.927 | -2.16 | 1.47 | -- | -0.363 | 7.91 | 78 | 1326 | -- | -- |
| 167.29 | 0.602 | 9.86 | -0.905 | 0.915 | -2.15 | -- | -0.532 | -0.359 | 7.71 | 77.82 | 1345 | -- | -- |
| 167.48 | 0.603 | 9.86 | -0.948 | 0.918 | -2.17 | -- | -- | -0.369 | 7.68 | 78 | 1344 | -- | -- |
| 211.83 | 0.678 | 9.88 | -0.886 | -- | -2.28 | -- | -0.541 | -0.346 | -- | 77 | 1369 | -- | -- |
| 224.19 | 0.702 | 9.83 | -0.83 | 0.992 | -- | 1.5 | -- | -0.258 | 7.17 | -- | -- | -- | -- |
| 230.11 | 0.71 | 9.84 | -0.8 | 0.997 | -- | -- | -- | -0.262 | 7.07 | -- | -- | -- | -- |
| 212.06 | 0.678 | 9.88 | -0.945 | -- | -2.31 | -- | -- | -0.362 | -- | 77.74 | 1369 | -- | -- |
| 190.41 | 0.643 | 9.84 | -- | 0.912 | -2.14 | -- | -- | -0.269 | 7.56 | 78 | 1367 | -- | -- |
| 282.51 | 0.785 | 9.86 | -0.781 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 246.99 | 0.735 | 9.82 | -- | 0.989 | -- | -- | -- | -0.172 | 7.12 | -- | -- | -- | -- |
| 234.31 | 0.713 | 9.85 | -- | -- | -2.29 | -- | -- | -0.246 | -- | 79 | 1379 | -- | -- |
| 298.59 | 0.807 | 9.84 | -- | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.44 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 2 | 156.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 13 | 157.12 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 15 | 158.56 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 17 | 161.09 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 18 | 161.47 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 22 | 161.49 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 23 | 161.49 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 29 | 161.82 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 30 | 162.03 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 57 | 163.28 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 60 | 163.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 63 | 163.75 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 83 | 164.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 91 | 164.13 | humidity | 60 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 94 | 164.15 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 112 | 164.32 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 138 | 164.54 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 167 | 164.67 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 193 | 164.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 213 | 164.89 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 219 | 164.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 289 | 165.28 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 302 | 165.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 347 | 165.65 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 350 | 165.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 404 | 165.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 412 | 165.99 | radiation | 20 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 424 | 166.03 | radiation | 20 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 433 | 166.06 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 444 | 166.12 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 453 | 166.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 455 | 166.17 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 459 | 166.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 470 | 166.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 473 | 166.25 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 479 | 166.30 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 492 | 166.36 | humidity | 70 | 1440 | > th | dose dependent | sin | 1 | NA |
| 510 | 166.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 553 | 166.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 598 | 166.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 611 | 166.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 621 | 166.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 622 | 166.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 635 | 166.91 | humidity | 70 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 638 | 166.92 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 5 |
| 649 | 166.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 664 | 167.00 | radiation | 40 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 718 | 167.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 747 | 167.25 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 766 | 167.34 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 781 | 167.38 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 797 | 167.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 799 | 167.43 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 815 | 167.45 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 821 | 167.46 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 853 | 167.56 | radiation | 40 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 876 | 167.66 | radiation | 1 | 1440 | > th | dose independent | sin | 12 | NA |
| 882 | 167.69 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 889 | 167.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 901 | 167.77 | humidity | 50 | 1440 | > th | dose dependent | sin | 16 | NA |
| 918 | 167.85 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 935 | 167.86 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 966 | 167.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 981 | 167.93 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 2 |