Os04g0419400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0419400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.9 | 0.435 | 8.79 | -1.72 | 0.386 | -1.98 | -0.15 | -5.13 | -0.245 | 22.3 | 11.47 | 5561 | -- | -- |
| 90.74 | 0.444 | 8.67 | -0.985 | 0.435 | -1.25 | -0.18 | -- | -0.223 | 22.5 | 25.79 | 2741 | -- | -- |
| 85.97 | 0.432 | 8.79 | -1.72 | 0.395 | -1.98 | -- | -5.14 | -0.247 | 22.2 | 11.6 | 5517 | -- | -- |
| 90.83 | 0.444 | 8.66 | -0.978 | 0.462 | -1.26 | -- | -- | -0.223 | 22.5 | 25.82 | 2709 | -- | -- |
| 94.23 | 0.452 | 8.78 | -1.69 | -- | -1.96 | -- | -5 | -0.23 | -- | 12.39 | 5757 | -- | -- |
| 155.08 | 0.584 | 8.68 | -1.41 | 0.336 | -- | -0.226 | -- | -0.291 | 21.4 | -- | -- | -- | -- |
| 155.24 | 0.583 | 8.68 | -1.4 | 0.339 | -- | -- | -- | -0.29 | 21.2 | -- | -- | -- | -- |
| 96 | 0.456 | 8.68 | -0.984 | -- | -1.27 | -- | -- | -0.245 | -- | 26.2 | 5750 | -- | -- |
| 106.23 | 0.48 | 8.58 | -- | 0.379 | -1.66 | -- | -- | 0.154 | 21.8 | 20.67 | 5657 | -- | -- |
| 161.91 | 0.595 | 8.67 | -1.4 | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
| 207.08 | 0.673 | 8.64 | -- | 0.341 | -- | -- | -- | -0.134 | 20.9 | -- | -- | -- | -- |
| 95.41 | 0.455 | 8.49 | -- | -- | -1.59 | -- | -- | 0.486 | -- | 22.94 | 38832 | -- | -- |
| 213.71 | 0.682 | 8.63 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.49 | temperature | 30 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 2 | 84.52 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 4 | 84.98 | temperature | 25 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 14 | 85.45 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 19 | 85.46 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 28 | 85.47 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 31 | 85.48 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 50 | 85.51 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 51 | 85.51 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 56 | 85.52 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 72 | 85.53 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 110 | 85.56 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 126 | 85.57 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 20 |
| 133 | 85.57 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 147 | 85.59 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 164 | 85.60 | temperature | 20 | 43200 | > th | dose independent | sin | 11 | NA |
| 166 | 85.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 181 | 85.60 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 232 | 85.64 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 233 | 85.64 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 245 | 85.64 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 286 | 85.67 | temperature | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 299 | 85.67 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 323 | 85.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 335 | 85.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 339 | 85.70 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 366 | 85.71 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 381 | 85.72 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 585 | 85.85 | temperature | 20 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 660 | 85.89 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 682 | 85.91 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 700 | 85.93 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 8 |
| 712 | 85.95 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 731 | 85.98 | temperature | 30 | 43200 | < th | dose independent | sin | 14 | NA |
| 742 | 85.99 | temperature | 30 | 43200 | > th | dose independent | sin | 14 | NA |
| 762 | 86.02 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 884 | 86.17 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 943 | 86.21 | temperature | 25 | 43200 | < th | dose dependent | sin | 20 | NA |
| 950 | 86.22 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 996 | 86.29 | temperature | 20 | 43200 | > th | dose independent | sin | 23 | NA |