Os04g0419200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0419200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.9 | 0.493 | 4.02 | -1.35 | 0.257 | -0.806 | -0.0752 | 1.01 | -0.213 | 14.8 | 24.2 | 1625 | -- | -- |
| 111.19 | 0.491 | 3.99 | -1.04 | 0.301 | -0.7 | 0.048 | -- | -0.137 | 15.2 | 23.7 | 1595 | -- | -- |
| 109.91 | 0.488 | 4.03 | -1.35 | 0.257 | -0.806 | -- | 1.01 | -0.213 | 14.9 | 24.22 | 1625 | -- | -- |
| 111.1 | 0.491 | 3.99 | -0.996 | 0.282 | -0.688 | -- | -- | -0.129 | 15.2 | 23.7 | 1568 | -- | -- |
| 113.64 | 0.496 | 4.02 | -1.36 | -- | -0.828 | -- | 1.04 | -0.229 | -- | 24.3 | 1678 | -- | -- |
| 131.77 | 0.538 | 3.92 | -0.709 | 0.26 | -- | -0.0389 | -- | 0.185 | 15.2 | -- | -- | -- | -- |
| 131.78 | 0.538 | 3.92 | -0.71 | 0.26 | -- | -- | -- | 0.185 | 15.2 | -- | -- | -- | -- |
| 115.42 | 0.5 | 3.99 | -1.01 | -- | -0.681 | -- | -- | -0.132 | -- | 23.62 | 1629 | -- | -- |
| 134.67 | 0.54 | 3.94 | -- | 0.291 | -0.468 | -- | -- | 0.0755 | 15.1 | 23.56 | 1556 | -- | -- |
| 135.62 | 0.544 | 3.92 | -0.721 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 145.07 | 0.563 | 3.9 | -- | 0.274 | -- | -- | -- | 0.264 | 15.2 | -- | -- | -- | -- |
| 139.47 | 0.55 | 3.94 | -- | -- | -0.455 | -- | -- | 0.0752 | -- | 23.57 | 1594 | -- | -- |
| 149.34 | 0.57 | 3.9 | -- | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 2 | 107.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 5 | 108.43 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 7 | 108.51 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 8 | 108.52 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 12 | 108.59 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 15 |
| 13 | 108.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 15 | 108.64 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 18 | 108.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 18 |
| 26 | 108.73 | wind | 5 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 30 | 108.81 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 32 | 108.82 | wind | 5 | 14400 | > th | dose independent | sin | 21 | NA |
| 34 | 108.82 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 15 |
| 35 | 108.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 37 | 108.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 44 | 108.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 68 | 109.00 | wind | 5 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 69 | 109.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 71 | 109.01 | wind | 5 | 14400 | < th | dose independent | sin | 22 | NA |
| 122 | 109.23 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 201 | 109.56 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 251 | 109.78 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 257 | 109.80 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 273 | 109.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 282 | 109.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 305 | 109.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 328 | 110.08 | wind | 5 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 489 | 110.59 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 21 |
| 491 | 110.61 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 19 |
| 547 | 110.75 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 21 |
| 556 | 110.78 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 667 | 111.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 694 | 111.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 699 | 111.18 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 727 | 111.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 732 | 111.26 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 733 | 111.26 | wind | 3 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 805 | 111.45 | wind | 5 | 14400 | > th | dose independent | no | NA | NA |
| 807 | 111.45 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 823 | 111.48 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 847 | 111.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 855 | 111.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 879 | 111.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 897 | 111.64 | wind | 5 | 14400 | < th | dose independent | no | NA | NA |
| 907 | 111.65 | wind | 3 | 14400 | > th | dose dependent | rect. | 8 | 10 |