Os04g0419100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0419100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1230.66 | 1.65 | 7.08 | -0.51 | 3.12 | 4.09 | -1.13 | 3.35 | 0.0332 | 1.16 | 0.7216 | 1428 | 7.09 | -- |
| 1243.36 | 1.64 | 7.07 | 0.0586 | 3.16 | 3.93 | -1.09 | -- | 0.0709 | 1.12 | 0.7457 | 1424 | 7.12 | -- |
| 1229.3 | 1.63 | 7.11 | -0.653 | 3.27 | 4.2 | -- | 3.74 | -0.0716 | 0.953 | 0.6994 | 1413 | 7.32 | -- |
| 1242.78 | 1.64 | 7.04 | 0.153 | 3.52 | 4.49 | -- | -- | 0.133 | 0.913 | 0.76 | 1411 | 6.8 | -- |
| 1433.27 | 1.76 | 7.01 | -0.383 | -- | 4.67 | -- | 3.18 | 0.211 | -- | 0.7206 | 1570 | 7.45 | -- |
| 1533.75 | 1.84 | 7.16 | -0.568 | 2.78 | -- | -2.04 | -- | -0.468 | 1.3 | -- | -- | -- | -- |
| 1550.79 | 1.84 | 7.16 | -0.498 | 2.78 | -- | -- | -- | -0.457 | 1.33 | -- | -- | -- | -- |
| 1378.3 | 1.73 | 7.01 | -0.0119 | -- | 5.03 | -- | -- | 0.052 | -- | 0.75 | 1580 | 6.06 | -- |
| 1243.32 | 1.64 | 7.04 | -- | 3.51 | 4.5 | -- | -- | 0.134 | 0.876 | 0.75 | 1411 | 6.79 | -- |
| 2027.25 | 2.1 | 7.12 | -0.389 | -- | -- | -- | -- | -0.399 | -- | -- | -- | -- | -- |
| 1557.33 | 1.85 | 7.14 | -- | 2.77 | -- | -- | -- | -0.402 | 1.32 | -- | -- | -- | -- |
| 1378.19 | 1.73 | 7.01 | -- | -- | 5.04 | -- | -- | 0.0563 | -- | 0.7506 | 1579 | 6.06 | -- |
| 2031.24 | 2.1 | 7.11 | -- | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1203.27 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 2 | 1203.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 5 | 1208.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 122 | 1219.75 | temperature | 20 | 14400 | < th | dose independent | sin | 8 | NA |
| 130 | 1220.25 | temperature | 20 | 14400 | > th | dose independent | sin | 9 | NA |
| 139 | 1220.56 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 146 | 1220.84 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 219 | 1222.94 | temperature | 20 | 14400 | < th | dose dependent | rect. | 13 | 16 |
| 226 | 1223.04 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 239 | 1223.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 280 | 1224.15 | temperature | 20 | 14400 | < th | dose dependent | sin | 13 | NA |
| 382 | 1226.14 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 386 | 1226.23 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 387 | 1226.24 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 406 | 1226.48 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 692 | 1229.81 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 700 | 1229.93 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 705 | 1230.06 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 23 |
| 762 | 1231.23 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 786 | 1231.69 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 798 | 1232.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 800 | 1232.10 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 841 | 1233.15 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 958 | 1237.79 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 978 | 1238.36 | temperature | 20 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 982 | 1238.55 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 993 | 1238.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 995 | 1239.08 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 1 |