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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0418800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hydroxyproline-rich glycoprotein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.065) R2 : 0.218
β1 : -2.04 (0.238) R2dD : 0.134 R2D : 0.0701
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.86 (0.28) R2dE : 0.0712 R2E : 0.0545
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.692 (0.14) R2dN8 : 0.059 R2N8 : 0.0352
σ : 1.21
deviance : 678.89
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 89.84
memory length : 55
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.47
open length of G : 1.78

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
664.11 1.21 3.89 -2.19 0.439 1.71 0.373 -4.58 -0.731 5.11 90.58 59 3.12 2.07
671.38 1.21 3.86 -2.04 0.441 1.9 -0.372 -- -0.757 4.79 93.49 30 3.27 2.22
663.59 1.2 3.88 -2.17 0.435 1.75 -- -4.52 -0.739 5.02 90.98 55 3.17 2.02
671.66 1.21 3.87 -2.03 0.469 1.94 -- -- -0.751 4.95 93.61 30 3.23 2.27
670.36 1.21 3.9 -2.18 -- 1.9 -- -4.23 -0.695 -- 89.88 53 3.28 1.98
703.91 1.24 3.89 -1.97 0.808 -- 0.0987 -- -0.856 4.82 -- -- -- --
703.94 1.24 3.89 -1.97 0.809 -- -- -- -0.857 4.81 -- -- -- --
678.89 1.21 3.86 -2.04 -- 1.86 -- -- -0.692 -- 89.84 55 3.47 1.78
778.92 1.3 3.82 -- 0.475 2.01 -- -- -0.542 4.98 94 30 3.26 2.25
738.5 1.27 3.89 -1.94 -- -- -- -- -0.836 -- -- -- -- --
806.12 1.33 3.84 -- 0.773 -- -- -- -0.637 4.88 -- -- -- --
789.1 1.31 3.82 -- -- 2.42 -- -- -0.507 -- 93.95 30 3.24 2.26
837.65 1.35 3.85 -- -- -- -- -- -0.621 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 669.81 humidity 90.0 90 > th dose dependent rect. 3 2
3 671.56 temperature 25.0 30 < th dose independent rect. 23 4
6 672.15 humidity 90.0 90 > th dose independent rect. 3 2
9 672.53 temperature 25.0 270 < th dose independent rect. 22 1
10 672.84 humidity 90.0 10 > th dose dependent rect. 3 20
11 673.21 temperature 25.0 30 > th dose independent rect. 19 1
13 673.38 temperature 20.0 270 > th dose independent rect. 24 21
14 673.46 temperature 25.0 30 > th dose dependent rect. 19 1
17 673.71 humidity 90.0 10 > th dose independent rect. 3 5
18 673.73 humidity 90.0 10 > th dose independent rect. 3 7
21 673.92 temperature 30.0 90 < th dose dependent rect. 23 4
22 674.01 wind 1.0 720 < th dose independent rect. 4 1
24 674.09 temperature 25.0 720 > th dose dependent rect. 21 2
25 674.15 wind 9.0 1440 < th dose independent rect. 24 4
29 674.47 temperature 20.0 270 > th dose independent rect. 1 19
34 674.65 temperature 30.0 1440 > th dose dependent rect. 18 1
49 674.76 temperature 20.0 270 > th dose independent rect. 14 19
56 675.21 precipitation 0.1 270 > th dose independent rect. 23 7
59 675.24 precipitation 0.1 270 > th dose dependent rect. 23 7
72 675.84 humidity 90.0 10 > th dose independent rect. 3 20
84 676.32 temperature 20.0 270 > th dose independent rect. 24 9
89 676.41 atmosphere 1015.0 30 < th dose dependent rect. 3 20
114 676.56 wind 1.0 720 < th dose dependent rect. 4 1
133 676.67 wind 3.0 270 > th dose dependent rect. 5 1
135 676.78 atmosphere 1015.0 30 < th dose dependent rect. 3 6
139 676.93 wind 3.0 30 > th dose independent rect. 3 6
153 677.32 temperature 20.0 30 > th dose independent rect. 3 20
162 677.44 humidity 90.0 10 > th dose independent rect. 3 3
174 677.63 wind 9.0 30 < th dose dependent rect. 23 4
185 677.96 humidity 50.0 1440 < th dose independent rect. 16 1
189 678.03 humidity 90.0 10 > th dose dependent rect. 3 7
202 678.24 humidity 50.0 1440 < th dose dependent rect. 16 1
219 678.62 wind 3.0 270 > th dose independent rect. 5 1
224 678.68 wind 5.0 30 < th dose independent rect. 23 4
225 678.69 precipitation 0.1 30 < th dose independent rect. 3 20
226 678.69 precipitation 0.1 30 < th dose dependent rect. 3 20
227 678.71 temperature 10.0 270 > th dose dependent rect. 24 9
241 678.94 atmosphere 1010.0 90 < th dose dependent rect. 3 2
243 678.95 humidity 50.0 30 > th dose dependent rect. 23 4
250 679.03 radiation 30.0 90 < th dose independent rect. 2 8
257 679.10 atmosphere 995.0 30 > th dose independent rect. 3 20
260 679.17 radiation 40.0 90 < th dose independent rect. 11 15
263 679.19 humidity 50.0 4320 > th dose independent rect. 13 1
264 679.20 temperature 20.0 90 > th dose independent rect. 3 6
271 679.25 wind 5.0 270 > th dose dependent rect. 4 4
273 679.31 atmosphere 1010.0 30 < th dose independent rect. 3 6
274 679.31 radiation 30.0 270 < th dose independent rect. 24 9
279 679.36 temperature 25.0 270 > th dose independent rect. 13 10
280 679.36 humidity 90.0 10 > th dose dependent rect. 3 11
288 679.42 temperature 10.0 30 > th dose independent rect. 23 4
290 679.42 humidity 50.0 30 > th dose independent rect. 23 4
293 679.42 atmosphere 995.0 30 > th dose independent rect. 23 4
294 679.42 radiation 1.0 30 < th dose independent rect. 23 4
299 679.42 temperature 10.0 30 > th dose independent rect. 3 20
301 679.42 atmosphere 1015.0 30 < th dose independent rect. 3 20
302 679.42 radiation 1.0 30 < th dose dependent rect. 23 4
318 679.50 wind 3.0 90 < th dose independent rect. 18 3
339 679.53 precipitation 0.1 30 < th dose independent rect. 23 4
340 679.53 precipitation 0.1 30 < th dose dependent rect. 23 4
343 679.58 wind 9.0 30 < th dose independent rect. 3 20
350 679.64 precipitation 0.1 270 > th dose independent rect. 5 1
351 679.64 precipitation 0.1 270 > th dose dependent rect. 5 1
355 679.65 wind 1.0 30 > th dose dependent rect. 3 6
356 679.66 atmosphere 1000.0 30 > th dose independent rect. 14 9
363 679.72 humidity 60.0 90 > th dose dependent rect. 2 8
366 679.76 radiation 40.0 10 < th dose dependent rect. 11 16
369 679.77 humidity 50.0 10 > th dose dependent rect. 3 7
371 679.81 wind 7.0 270 < th dose dependent rect. 22 2
381 679.89 atmosphere 1005.0 90 < th dose dependent rect. 18 3
386 679.93 humidity 50.0 10 > th dose independent rect. 23 15
399 680.01 temperature 25.0 10 < th dose independent rect. 3 6
407 680.13 wind 9.0 270 < th dose independent rect. 9 15
413 680.17 wind 9.0 270 < th dose dependent rect. 20 18
418 680.20 wind 5.0 270 < th dose independent rect. 21 16
423 680.23 wind 9.0 270 < th dose dependent rect. 21 16
439 680.40 wind 7.0 1440 > th dose dependent rect. 22 2
458 680.58 wind 3.0 90 < th dose dependent rect. 18 3
467 680.68 atmosphere 995.0 30 > th dose dependent rect. 23 15
471 680.73 temperature 30.0 10 < th dose dependent rect. 23 17
474 680.75 humidity 50.0 270 > th dose dependent rect. 24 9
476 680.78 temperature 25.0 30 < th dose dependent rect. 4 1
479 680.81 humidity 70.0 720 > th dose independent rect. 18 8
494 680.91 wind 5.0 270 < th dose independent rect. 22 2
497 680.92 humidity 90.0 10 > th dose independent rect. 3 11
518 681.12 wind 7.0 1440 > th dose independent rect. 22 2
520 681.12 atmosphere 995.0 270 > th dose independent rect. 24 22
527 681.17 radiation 40.0 10 < th dose independent rect. 23 15
530 681.19 temperature 25.0 270 < th dose independent rect. 8 16
540 681.23 wind 1.0 90 < th dose independent rect. 4 1
571 681.52 atmosphere 1015.0 270 < th dose independent rect. 24 22
573 681.54 temperature 10.0 1440 > th dose independent rect. 15 9
576 681.54 temperature 10.0 1440 > th dose independent rect. 24 15
582 681.55 precipitation 0.1 30 < th dose independent rect. 14 9
583 681.55 radiation 20.0 30 < th dose independent rect. 23 15
585 681.55 precipitation 0.1 30 < th dose dependent rect. 14 9
588 681.58 wind 1.0 30 > th dose independent rect. 14 9
600 681.64 temperature 10.0 30 > th dose independent rect. 14 9
602 681.64 atmosphere 1010.0 30 < th dose independent rect. 14 9
604 681.64 temperature 10.0 30 > th dose independent rect. 23 15
605 681.64 atmosphere 995.0 30 > th dose independent rect. 23 15
612 681.65 humidity 60.0 270 > th dose independent rect. 24 9
618 681.66 atmosphere 1015.0 270 < th dose dependent rect. 24 21
619 681.67 humidity 50.0 270 > th dose dependent rect. 22 2
628 681.72 temperature 20.0 270 < th dose independent rect. 4 22
631 681.73 radiation 40.0 30 < th dose independent rect. 14 9
632 681.73 temperature 15.0 90 > th dose dependent rect. 3 6
641 681.77 precipitation 0.1 30 < th dose independent rect. 23 15
643 681.77 precipitation 0.1 30 < th dose dependent rect. 23 15
652 681.82 atmosphere 1015.0 30 < th dose dependent rect. 14 9
659 681.87 atmosphere 1005.0 30 < th dose independent rect. 18 4
668 681.88 temperature 30.0 30 < th dose dependent rect. 23 15
684 681.93 atmosphere 995.0 30 > th dose dependent rect. 23 4
694 681.98 wind 9.0 30 < th dose dependent rect. 23 15
713 682.09 temperature 20.0 90 > th dose dependent rect. 3 2
717 682.10 temperature 15.0 270 > th dose dependent rect. 14 19
719 682.11 atmosphere 1015.0 270 < th dose independent rect. 24 9
720 682.11 wind 9.0 90 < th dose independent rect. 9 17
722 682.12 temperature 10.0 270 > th dose independent rect. 22 2
724 682.12 humidity 50.0 270 > th dose independent rect. 22 2
727 682.12 atmosphere 995.0 270 > th dose independent rect. 22 2
728 682.12 radiation 1.0 270 < th dose independent rect. 22 2
735 682.12 temperature 10.0 270 > th dose independent rect. 24 22
736 682.12 radiation 1.0 270 < th dose dependent rect. 22 2
743 682.13 temperature 10.0 270 > th dose independent rect. 24 9
745 682.13 atmosphere 995.0 270 > th dose independent rect. 24 9
746 682.13 temperature 10.0 270 > th dose independent rect. 9 15
752 682.14 atmosphere 1015.0 270 < th dose dependent rect. 14 6
759 682.17 wind 9.0 270 < th dose independent rect. 24 9
763 682.21 precipitation 0.1 270 < th dose independent rect. 22 2
765 682.21 precipitation 0.1 270 < th dose dependent rect. 22 2
778 682.25 temperature 30.0 270 < th dose independent rect. 24 9
791 682.32 humidity 70.0 720 < th dose independent rect. 18 1
821 682.44 radiation 40.0 30 < th dose dependent rect. 23 15
823 682.45 atmosphere 1015.0 270 < th dose dependent rect. 24 9
831 682.47 temperature 20.0 90 < th dose independent rect. 22 21
864 682.60 precipitation 0.1 270 < th dose independent rect. 9 15
867 682.60 precipitation 0.1 270 < th dose dependent rect. 9 15
879 682.67 humidity 50.0 1440 > th dose independent rect. 16 1
881 682.67 radiation 1.0 30 < th dose independent rect. 3 20
885 682.68 wind 1.0 4320 < th dose dependent rect. 22 1
893 682.70 precipitation 0.1 270 < th dose independent rect. 24 22
896 682.70 precipitation 0.1 270 < th dose dependent rect. 24 22
918 682.80 humidity 60.0 90 > th dose independent rect. 2 7
925 682.82 atmosphere 995.0 270 > th dose dependent rect. 23 1
948 682.87 precipitation 0.1 270 < th dose independent rect. 24 9
952 682.87 precipitation 0.1 270 < th dose dependent rect. 24 9
957 682.89 humidity 50.0 10 > th dose independent rect. 14 9
967 682.92 atmosphere 995.0 4320 > th dose independent rect. 3 3
968 682.92 atmosphere 995.0 1440 > th dose independent rect. 16 8
972 682.94 atmosphere 995.0 270 > th dose dependent rect. 20 18
977 682.96 temperature 10.0 720 > th dose dependent rect. 17 8
982 682.98 atmosphere 1015.0 270 < th dose dependent rect. 14 19
984 682.99 temperature 10.0 30 > th dose dependent rect. 14 9