Os04g0416000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1279 domain containing protein.
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Os04g0416000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1279 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.38 | 0.389 | 10.6 | 0.384 | 0.573 | -0.835 | 0.145 | 0.239 | -0.527 | 10.8 | 69.79 | 6 | -- | -- |
| 68.33 | 0.388 | 10.6 | 0.398 | 0.564 | -0.84 | 0.0159 | -- | -0.529 | 10.8 | 69.59 | 5 | -- | -- |
| 68.25 | 0.388 | 10.6 | 0.393 | 0.563 | -0.847 | -- | 0.146 | -0.531 | 10.8 | 69.72 | 5 | -- | -- |
| 68.33 | 0.388 | 10.6 | 0.398 | 0.563 | -0.841 | -- | -- | -0.529 | 10.8 | 69.59 | 5 | -- | -- |
| 82.75 | 0.426 | 10.6 | 0.393 | -- | -1.17 | -- | 0.136 | -0.536 | -- | 64.93 | 2 | -- | -- |
| 84.78 | 0.432 | 10.5 | 0.383 | 1.1 | -- | 0.313 | -- | -0.445 | 12.8 | -- | -- | -- | -- |
| 85.2 | 0.432 | 10.5 | 0.395 | 1.1 | -- | -- | -- | -0.444 | 12.8 | -- | -- | -- | -- |
| 82.8 | 0.426 | 10.6 | 0.398 | -- | -1.17 | -- | -- | -0.534 | -- | 64.84 | 2 | -- | -- |
| 72.49 | 0.399 | 10.6 | -- | 0.558 | -0.844 | -- | -- | -0.571 | 10.7 | 69 | 5 | -- | -- |
| 160.96 | 0.593 | 10.6 | 0.354 | -- | -- | -- | -- | -0.464 | -- | -- | -- | -- | -- |
| 89.3 | 0.442 | 10.6 | -- | 1.09 | -- | -- | -- | -0.487 | 12.8 | -- | -- | -- | -- |
| 86.97 | 0.436 | 10.6 | -- | -- | -1.16 | -- | -- | -0.578 | -- | 64.84 | 2 | -- | -- |
| 164.27 | 0.598 | 10.6 | -- | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.11 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 3 | 68.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 4 | 68.75 | humidity | 70 | 10 | > th | dose dependent | no | NA | NA |
| 6 | 68.76 | humidity | 70 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 7 | 68.81 | humidity | 70 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 9 | 68.82 | humidity | 70 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 10 | 68.93 | humidity | 70 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 13 | 69.21 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 19 | 69.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 27 | 69.67 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 35 | 69.84 | humidity | 60 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 47 | 70.03 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 19 |
| 48 | 70.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 50 | 70.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 57 | 70.15 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 66 | 70.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 73 | 70.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 100 | 70.47 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 104 | 70.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 231 | 70.97 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 10 |
| 265 | 71.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 278 | 71.27 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 17 |
| 280 | 71.28 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 23 |
| 284 | 71.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 292 | 71.39 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 20 |
| 295 | 71.41 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 19 |
| 298 | 71.43 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 301 | 71.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 314 | 71.57 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 22 |
| 324 | 71.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 345 | 71.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 351 | 71.76 | humidity | 80 | 10 | > th | dose independent | rect. | 7 | 23 |
| 357 | 71.77 | radiation | 10 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 364 | 71.80 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 365 | 71.81 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 386 | 71.88 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 19 |
| 387 | 71.88 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 5 |
| 396 | 71.91 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 444 | 72.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 460 | 72.09 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 470 | 72.15 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 471 | 72.15 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 498 | 72.26 | humidity | 60 | 720 | < th | dose independent | rect. | 13 | 3 |
| 514 | 72.30 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 21 |
| 516 | 72.31 | humidity | 80 | 720 | < th | dose dependent | rect. | 6 | 11 |
| 538 | 72.37 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 15 |
| 539 | 72.37 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 20 |
| 571 | 72.45 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 1 |
| 588 | 72.49 | humidity | 70 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 611 | 72.53 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 617 | 72.54 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 22 |
| 635 | 72.57 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 646 | 72.60 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 17 |
| 650 | 72.61 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 15 |
| 665 | 72.65 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 666 | 72.66 | humidity | 80 | 10 | > th | dose independent | rect. | 11 | 23 |
| 693 | 72.68 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 695 | 72.69 | humidity | 80 | 10 | > th | dose independent | rect. | 19 | 23 |
| 702 | 72.70 | humidity | 80 | 10 | > th | dose independent | no | NA | NA |
| 710 | 72.71 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 713 | 72.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 722 | 72.73 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 727 | 72.74 | humidity | 80 | 10 | > th | dose independent | rect. | 17 | 23 |
| 735 | 72.75 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 739 | 72.76 | humidity | 60 | 720 | > th | dose independent | rect. | 9 | 12 |
| 747 | 72.77 | humidity | 80 | 10 | > th | dose independent | rect. | 13 | 23 |
| 763 | 72.81 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 790 | 72.85 | humidity | 80 | 10 | > th | dose independent | rect. | 15 | 23 |
| 796 | 72.86 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 21 |
| 845 | 72.93 | humidity | 50 | 30 | > th | dose dependent | rect. | 11 | 12 |
| 862 | 72.95 | radiation | 1 | 90 | < th | dose independent | rect. | 20 | 23 |
| 955 | 73.06 | humidity | 60 | 720 | > th | dose independent | rect. | 9 | 8 |
| 975 | 73.08 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 13 |