Os04g0414900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0414900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.56 | 0.408 | 6.61 | -2.92 | 0.33 | 0.674 | 1.13 | 4.23 | -0.0899 | 1.37 | 1.589 | 4294 | -- | -- |
| 80.08 | 0.417 | 6.48 | -2.11 | 0.207 | 0.651 | 0.807 | -- | 0.19 | 1.53 | 19.64 | 7395 | -- | -- |
| 75.07 | 0.404 | 6.6 | -2.88 | 0.117 | 0.707 | -- | 4.55 | -0.0771 | 1.46 | 2.006 | 4492 | -- | -- |
| 78.25 | 0.412 | 6.46 | -2.22 | 0.262 | 0.672 | -- | -- | 0.264 | 1.45 | 16.61 | 21824 | -- | -- |
| 75.63 | 0.405 | 6.59 | -2.85 | -- | 0.824 | -- | 4.74 | -0.0576 | -- | 1.928 | 4525 | -- | -- |
| 94.8 | 0.456 | 6.52 | -2.07 | 0.272 | -- | 0.917 | -- | 0.0281 | 1.48 | -- | -- | -- | -- |
| 98.19 | 0.464 | 6.53 | -2.1 | 0.271 | -- | -- | -- | 0.0231 | 1.38 | -- | -- | -- | -- |
| 80.73 | 0.418 | 6.45 | -2.12 | -- | 0.817 | -- | -- | 0.356 | -- | 13.85 | 21960 | -- | -- |
| 170.85 | 0.609 | 6.46 | -- | 0.193 | 0.812 | -- | -- | 0.402 | 23.7 | 3.17 | 20171 | -- | -- |
| 102.71 | 0.474 | 6.52 | -2.09 | -- | -- | -- | -- | 0.0288 | -- | -- | -- | -- | -- |
| 214.2 | 0.685 | 6.47 | -- | 0.235 | -- | -- | -- | 0.257 | 1.07 | -- | -- | -- | -- |
| 120.8 | 0.512 | 6.42 | -- | -- | 1.76 | -- | -- | 0.76 | -- | 3.16 | 46443 | -- | -- |
| 217.64 | 0.689 | 6.47 | -- | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.96 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 2 | 62.54 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 5 | 64.14 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 25 | 68.05 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 27 | 68.15 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 31 | 68.19 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 34 | 68.21 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 38 | 68.24 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 43 | 68.29 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 46 | 68.33 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 91 | 68.85 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 101 | 68.97 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 104 | 69.03 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 116 | 69.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 117 | 69.15 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 133 | 69.34 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 159 | 69.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 160 | 69.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 162 | 69.45 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 167 | 69.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 173 | 69.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 186 | 69.56 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 223 | 69.69 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 261 | 69.83 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 276 | 69.84 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 291 | 69.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 292 | 69.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 297 | 69.88 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 15 | 5 |
| 313 | 69.91 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 345 | 69.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 381 | 70.02 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 391 | 70.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 399 | 70.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 450 | 70.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 454 | 70.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 458 | 70.17 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 471 | 70.20 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 480 | 70.21 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 499 | 70.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 505 | 70.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 531 | 70.28 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 540 | 70.29 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 551 | 70.31 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 574 | 70.33 | temperature | 20.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 595 | 70.35 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 670 | 70.42 | temperature | 25.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 684 | 70.43 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 694 | 70.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 696 | 70.44 | temperature | 25.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 745 | 70.47 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 785 | 70.49 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 792 | 70.50 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 810 | 70.51 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 822 | 70.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 834 | 70.52 | temperature | 20.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 860 | 70.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 874 | 70.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 897 | 70.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 947 | 70.58 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 958 | 70.59 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 972 | 70.59 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |