Os04g0414400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0414400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.37 | 0.394 | 7.44 | 0.595 | 1.07 | 0.606 | -0.0183 | 0.8 | -0.201 | 15.2 | 44.55 | 1349 | -- | -- |
| 71.21 | 0.393 | 7.44 | 0.557 | 1.07 | 0.633 | -0.0633 | -- | -0.211 | 15.2 | 44.75 | 1371 | -- | -- |
| 70.34 | 0.391 | 7.44 | 0.6 | 1.07 | 0.623 | -- | 0.851 | -0.199 | 15.2 | 45.57 | 1349 | -- | -- |
| 71.19 | 0.393 | 7.45 | 0.522 | 1.06 | 0.618 | -- | -- | -0.225 | 15.2 | 44 | 1373 | -- | -- |
| 118.02 | 0.506 | 7.46 | 0.55 | -- | 0.995 | -- | 0.729 | -0.271 | -- | 42.07 | 1944 | -- | -- |
| 81.47 | 0.423 | 7.43 | 0.54 | 1.01 | -- | -0.143 | -- | -0.152 | 15.3 | -- | -- | -- | -- |
| 81.53 | 0.423 | 7.43 | 0.537 | 1.01 | -- | -- | -- | -0.152 | 15.3 | -- | -- | -- | -- |
| 101.21 | 0.469 | 7.49 | 0.493 | -- | 1.27 | -- | -- | -0.359 | -- | 34.67 | 457 | -- | -- |
| 77.57 | 0.41 | 7.45 | -- | 1.06 | 0.59 | -- | -- | -0.283 | 15.2 | 40 | 1348 | -- | -- |
| 139.22 | 0.551 | 7.43 | 0.495 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 89.14 | 0.442 | 7.44 | -- | 1 | -- | -- | -- | -0.212 | 15.3 | -- | -- | -- | -- |
| 89.5 | 0.441 | 7.46 | -- | -- | 1.27 | -- | -- | -0.324 | -- | -4.882 | 444 | -- | -- |
| 145.67 | 0.563 | 7.44 | -- | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.96 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 2 | 69.03 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 3 | 69.14 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 4 | 69.29 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 5 | 69.34 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 6 | 69.34 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 23 | 69.35 | humidity | 50 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 30 | 69.35 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 44 | 69.40 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 46 | 69.43 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 136 | 69.56 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 141 | 69.60 | humidity | 50 | 30 | > th | dose dependent | rect. | 11 | 16 |
| 186 | 70.02 | humidity | 50 | 4320 | < th | dose independent | sin | 12 | NA |
| 193 | 70.15 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 208 | 70.19 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 210 | 70.22 | humidity | 50 | 4320 | > th | dose independent | sin | 12 | NA |
| 213 | 70.29 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 238 | 70.38 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 318 | 70.52 | radiation | 40 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 321 | 70.55 | radiation | 40 | 1440 | > th | dose dependent | rect. | 15 | 20 |
| 324 | 70.57 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 347 | 70.58 | humidity | 50 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 415 | 70.61 | radiation | 40 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 459 | 70.64 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 582 | 70.96 | radiation | 40 | 1440 | > th | dose independent | sin | 11 | NA |
| 634 | 71.05 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 638 | 71.07 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 9 |
| 641 | 71.07 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 667 | 71.11 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 679 | 71.11 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 692 | 71.12 | radiation | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 722 | 71.16 | humidity | 50 | 4320 | < th | dose independent | no | NA | NA |
| 859 | 71.17 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 907 | 71.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 915 | 71.24 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 919 | 71.25 | humidity | 50 | 90 | > th | dose dependent | rect. | 10 | 5 |
| 921 | 71.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 936 | 71.32 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 941 | 71.32 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 958 | 71.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 963 | 71.37 | radiation | 40 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 971 | 71.38 | radiation | 40 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 995 | 71.39 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 8 |