Os04g0414300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0414300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.95 | 0.342 | 8.08 | 0.324 | 0.491 | -1.43 | -0.0495 | -0.138 | 0.053 | 17.4 | 24.95 | 98 | -- | -- |
| 52.91 | 0.339 | 8.08 | 0.302 | 0.485 | -1.42 | -0.0569 | -- | 0.0458 | 17.3 | 24.96 | 111 | -- | -- |
| 52.85 | 0.339 | 8.08 | 0.323 | 0.487 | -1.43 | -- | -0.166 | 0.0541 | 17.3 | 24.9 | 117 | -- | -- |
| 52.9 | 0.339 | 8.08 | 0.301 | 0.485 | -1.42 | -- | -- | 0.0476 | 17.3 | 24.98 | 116 | -- | -- |
| 59.47 | 0.359 | 8.08 | 0.229 | -- | -1.66 | -- | -0.0835 | -0.0191 | -- | 27.82 | 153 | -- | -- |
| 81.66 | 0.424 | 8.01 | 0.651 | 0.683 | -- | -0.208 | -- | 0.324 | 16.2 | -- | -- | -- | -- |
| 81.78 | 0.423 | 8.02 | 0.648 | 0.683 | -- | -- | -- | 0.323 | 16.3 | -- | -- | -- | -- |
| 59.34 | 0.359 | 8.09 | 0.232 | -- | -1.59 | -- | -- | -0.0232 | -- | 28.03 | 153 | -- | -- |
| 55.09 | 0.346 | 8.09 | -- | 0.467 | -1.51 | -- | -- | 0.00631 | 17.3 | 24.95 | 126 | -- | -- |
| 106.91 | 0.483 | 8.01 | 0.621 | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
| 92.86 | 0.451 | 8.03 | -- | 0.67 | -- | -- | -- | 0.251 | 16.3 | -- | -- | -- | -- |
| 60.66 | 0.363 | 8.09 | -- | -- | -1.67 | -- | -- | -0.0627 | -- | 27.93 | 153 | -- | -- |
| 117.09 | 0.505 | 8.03 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 53.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 3 | 53.07 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 4 | 53.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 5 | 53.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 7 | 53.17 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 8 | 53.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 53.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 18 | 53.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 53.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 34 | 54.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 36 | 54.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 38 | 54.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 42 | 54.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 331 | 57.46 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 361 | 57.62 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 378 | 57.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 387 | 57.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 414 | 58.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 422 | 58.14 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 429 | 58.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 473 | 58.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 484 | 58.68 | temperature | 25 | 90 | < th | dose dependent | sin | 8 | NA |
| 547 | 59.00 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 555 | 59.02 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 571 | 59.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 592 | 59.28 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 607 | 59.32 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 645 | 59.43 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 665 | 59.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 754 | 59.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 768 | 59.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 771 | 59.91 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 776 | 59.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 812 | 60.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 827 | 60.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 854 | 60.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 872 | 60.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 877 | 60.23 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 895 | 60.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 898 | 60.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 973 | 60.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 982 | 60.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 21 |