Os04g0413000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ABC transporter, transmembrane region, type 1 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0413000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : ABC transporter, transmembrane region, type 1 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.25 | 0.454 | 7.36 | -0.207 | 2.45 | 0.173 | -1.92 | -2.83 | -0.03 | 16.8 | 23.45 | 585 | -- | -- |
| 97.2 | 0.459 | 7.4 | -0.442 | 2.44 | 1.07 | -1.55 | -- | -0.0855 | 16.8 | 19.3 | 2296 | -- | -- |
| 98.2 | 0.462 | 7.35 | -0.176 | 2.42 | 0.354 | -- | -2.65 | -0.00335 | 16.8 | 23.32 | 1171 | -- | -- |
| 102.97 | 0.473 | 7.4 | -0.38 | 2.41 | 1.13 | -- | -- | -0.0639 | 16.8 | 19.36 | 2386 | -- | -- |
| 400.64 | 0.932 | 7.29 | 0.0405 | -- | 0.876 | -- | -2.96 | 0.0967 | -- | 26.37 | 1176 | -- | -- |
| 107.45 | 0.486 | 7.43 | -0.743 | 2.44 | -- | -1.63 | -- | -0.193 | 16.7 | -- | -- | -- | -- |
| 114.34 | 0.501 | 7.43 | -0.752 | 2.43 | -- | -- | -- | -0.201 | 16.8 | -- | -- | -- | -- |
| 402.76 | 0.935 | 7.37 | -0.297 | -- | 1.65 | -- | -- | -0.0663 | -- | 19.2 | 2579 | -- | -- |
| 103.81 | 0.475 | 7.4 | -- | 2.43 | 1.73 | -- | -- | -0.0366 | 16.8 | 17.15 | 6692 | -- | -- |
| 427.1 | 0.966 | 7.41 | -0.843 | -- | -- | -- | -- | -0.265 | -- | -- | -- | -- | -- |
| 129.23 | 0.532 | 7.41 | -- | 2.44 | -- | -- | -- | -0.118 | 16.8 | -- | -- | -- | -- |
| 404.5 | 0.937 | 7.35 | -- | -- | 1.85 | -- | -- | -0.0111 | -- | 19.3 | 2588 | -- | -- |
| 445.85 | 0.986 | 7.39 | -- | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 2 | 85.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 8 | 87.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 18 |
| 15 | 87.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 27 | 87.91 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 19 |
| 59 | 89.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 63 | 89.44 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 13 |
| 94 | 90.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 117 | 90.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 120 | 90.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 123 | 90.69 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 125 | 90.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 144 | 90.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 150 | 90.83 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 208 | 91.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 210 | 91.23 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 258 | 91.46 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 279 | 91.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 284 | 91.59 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 374 | 91.88 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 418 | 92.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 20 |
| 433 | 92.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 489 | 92.18 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 502 | 92.21 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 521 | 92.26 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 23 | 18 |
| 530 | 92.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 538 | 92.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 553 | 92.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 566 | 92.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 578 | 92.37 | temperature | 30 | 30 | < th | dose independent | rect. | 23 | 18 |
| 580 | 92.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 584 | 92.39 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 651 | 92.59 | radiation | 20 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 660 | 92.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 669 | 92.64 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 17 | 19 |
| 685 | 92.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 708 | 92.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 751 | 92.81 | temperature | 10 | 10 | > th | dose dependent | sin | 8 | NA |
| 757 | 92.83 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 763 | 92.85 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 765 | 92.85 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 772 | 92.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 786 | 92.87 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 796 | 92.89 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 797 | 92.89 | wind | 1 | 30 | > th | dose independent | rect. | 23 | 18 |
| 798 | 92.89 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 18 |
| 803 | 92.90 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 821 | 92.92 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 840 | 92.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 868 | 93.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 904 | 93.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 917 | 93.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 976 | 93.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 9 |