FiT-DB / Search/ Help/ Sample detail

Os04g0412500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0395) R2 : 0.621
β1 : -1 (0.151) R2dD : 0.0426 R2D : 0.0992
β2 : 1.07 (0.104) R2dC : 0.094 R2C : 0.141
β3 : -2.85 (0.162) R2dE : 0.294 R2E : 0.338
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.26 (0.596) R2dD*E : 0.102 R2D*E : 0.107
γ1 : -0.372 (0.0843) R2dN8 : 0.023 R2N8 : -0.0245
σ : 0.727
deviance : 243.53
__
_____
C
peak time of C : 6.48
E
wheather : radiation
threshold : 208.9
memory length : 1445
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 14.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.08 0.726 12.2 -1.05 1.16 -2.61 1.65 -5.53 -0.374 7.41 160.8 1446 16 14.3
286.31 0.788 12.2 -1.05 1.16 -2.61 2.85 -- -0.374 7.41 160.8 1446 16 14.3
243.53 0.727 12.2 -1 1.07 -2.85 -- -6.26 -0.372 6.48 208.9 1445 16 14.3
300.08 0.807 12.2 -1.47 1.1 -2.61 -- -- -0.467 6.93 176.9 1445 15.9 14.4
295.46 0.801 12.2 -0.979 -- -3.18 -- -6.04 -0.43 -- 240.3 1445 15.9 14.4
367.06 0.898 12 -1.9 1.69 -- 2.86 -- -0.143 8.8 -- -- -- --
394.27 0.93 12 -1.81 1.69 -- -- -- -0.144 8.67 -- -- -- --
353.25 0.875 12.2 -1.42 -- -3.02 -- -- -0.468 -- 244.6 1445 15.8 14.5
355.59 0.878 12.2 -- 1.07 -2.9 -- -- -0.393 6.97 188.9 1444 15.9 14.3
555.76 1.1 12.1 -1.8 -- -- -- -- -0.129 -- -- -- -- --
480.48 1.03 12 -- 1.69 -- -- -- 0.0577 8.75 -- -- -- --
403.91 0.936 12.2 -- -- -3.29 -- -- -0.355 -- 251.8 1444 15.9 14.3
641.65 1.18 12 -- -- -- -- -- 0.0708 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 249.94 humidity 70.0 14400 < th dose independent rect. 19 2
13 252.64 humidity 70.0 14400 > th dose independent rect. 19 2
17 252.98 humidity 70.0 14400 > th dose independent rect. 19 11
24 254.10 radiation 40.0 1440 < th dose dependent rect. 16 14
25 254.11 radiation 40.0 1440 < th dose dependent rect. 16 3
26 254.17 radiation 40.0 1440 < th dose dependent rect. 16 5
52 255.68 precipitation 0.1 43200 > th dose dependent rect. 10 9
60 256.24 radiation 1.0 1440 > th dose dependent rect. 16 1
69 256.59 radiation 1.0 1440 > th dose dependent rect. 16 14
78 257.00 radiation 1.0 1440 > th dose dependent rect. 16 3
88 257.03 radiation 10.0 14400 < th dose independent rect. 16 2
90 257.03 radiation 10.0 14400 < th dose independent rect. 16 5
92 257.05 wind 5.0 43200 > th dose independent rect. 20 2
94 257.05 radiation 10.0 14400 < th dose independent rect. 16 13
105 257.18 radiation 10.0 14400 < th dose independent rect. 15 15
109 257.28 temperature 25.0 14400 > th dose dependent rect. 18 4
112 257.37 precipitation 0.1 43200 > th dose independent rect. 16 3
117 257.62 wind 5.0 43200 < th dose independent rect. 20 2
118 257.62 precipitation 0.1 43200 > th dose dependent rect. 14 8
120 257.64 precipitation 0.1 43200 > th dose dependent rect. 16 7
122 257.67 precipitation 0.1 43200 < th dose independent rect. 16 3
123 257.67 precipitation 0.1 43200 < th dose dependent rect. 16 3
125 257.70 precipitation 0.1 43200 > th dose independent rect. 14 4
136 257.77 precipitation 0.1 43200 < th dose independent rect. 14 4
140 257.77 precipitation 0.1 43200 < th dose dependent rect. 14 4
168 257.98 precipitation 0.1 43200 > th dose dependent rect. 5 13
182 258.16 precipitation 0.1 43200 > th dose dependent rect. 6 15
193 258.26 temperature 30.0 14400 > th dose dependent rect. 16 18
194 258.27 precipitation 0.1 43200 > th dose dependent sin 20 NA
201 258.32 temperature 30.0 14400 > th dose dependent sin 11 NA
218 258.56 temperature 30.0 14400 > th dose dependent rect. 16 3
244 258.73 temperature 30.0 14400 > th dose dependent rect. 14 21
250 258.79 temperature 25.0 14400 > th dose dependent rect. 18 14
257 258.86 temperature 30.0 14400 < th dose independent rect. 18 1
261 258.87 temperature 30.0 14400 > th dose dependent rect. 13 6
278 258.88 temperature 30.0 14400 > th dose independent rect. 18 1
329 258.97 temperature 30.0 14400 < th dose independent rect. 18 3
334 258.99 temperature 30.0 14400 < th dose independent rect. 18 13
339 259.01 temperature 25.0 14400 < th dose independent rect. 19 7
417 259.22 temperature 30.0 14400 > th dose dependent no NA NA
506 259.22 temperature 30.0 14400 > th dose dependent rect. 16 23
523 259.28 temperature 25.0 14400 < th dose independent rect. 20 2
526 259.29 temperature 30.0 14400 > th dose dependent rect. 16 1
529 259.31 radiation 10.0 14400 < th dose dependent rect. 16 1
531 259.32 radiation 30.0 1440 < th dose independent rect. 15 17
555 259.35 temperature 30.0 14400 > th dose dependent rect. 18 23
578 259.41 temperature 30.0 14400 > th dose dependent rect. 14 1
602 259.52 radiation 10.0 14400 > th dose dependent rect. 16 15
623 259.56 precipitation 0.1 43200 < th dose independent rect. 19 2
624 259.56 precipitation 0.1 43200 < th dose dependent rect. 19 2
709 259.96 temperature 30.0 14400 > th dose independent sin 11 NA
710 259.96 temperature 30.0 14400 < th dose independent sin 11 NA
715 259.98 temperature 30.0 14400 < th dose independent rect. 18 20
731 260.01 precipitation 0.1 43200 > th dose independent rect. 19 2
738 260.03 wind 5.0 43200 > th dose independent rect. 20 5
741 260.04 temperature 30.0 14400 < th dose independent rect. 16 19
745 260.07 temperature 30.0 14400 > th dose independent rect. 18 21
769 260.19 temperature 30.0 14400 > th dose independent rect. 16 19
819 260.33 radiation 1.0 14400 > th dose dependent rect. 16 1
821 260.34 radiation 30.0 1440 < th dose independent rect. 15 4
822 260.35 radiation 30.0 1440 < th dose independent rect. 15 6
842 260.45 radiation 30.0 14400 < th dose dependent rect. 16 1
843 260.46 temperature 30.0 14400 < th dose independent sin 5 NA
894 260.70 wind 5.0 43200 > th dose dependent rect. 19 3
896 260.72 temperature 30.0 14400 > th dose independent sin 5 NA
905 260.74 temperature 30.0 14400 < th dose independent rect. 2 13
908 260.75 temperature 30.0 14400 < th dose independent rect. 9 5
909 260.75 temperature 30.0 14400 < th dose independent rect. 4 11
913 260.76 temperature 30.0 14400 < th dose independent rect. 6 9
915 260.76 radiation 10.0 14400 > th dose independent rect. 16 14
950 260.85 temperature 30.0 14400 > th dose independent rect. 9 6
958 260.88 radiation 10.0 14400 > th dose independent rect. 16 2
989 260.90 wind 5.0 43200 < th dose independent rect. 20 5