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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0411400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Terminal flower 1-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0275) R2 : 0.00632
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0985 (0.0578) R2dN8 : 0.00816 R2N8 : 0.00632
σ : 0.517
deviance : 122.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.57 0.512 3.12 -0.0156 0.394 -0.388 -0.318 -0.174 -0.117 0.809 20 17 -- --
118.56 0.507 3.13 -0.0167 0.419 -0.402 -0.487 -- -0.124 0.713 16.76 18 -- --
118.77 0.508 3.12 -0.00112 0.391 -0.38 -- -0.286 -0.11 0.712 18.62 17 -- --
119.56 0.509 3.12 0.00138 0.426 -0.41 -- -- -0.119 0.701 17.55 17 -- --
120.87 0.515 3.11 -0.00214 -- -0.0814 -- -0.471 -0.0976 -- 18.62 17 -- --
121.53 0.517 3.11 -0.00601 0.019 -- 0.518 -- -0.0989 11.9 -- -- -- --
122.38 0.518 3.11 0.0124 0.0792 -- -- -- -0.0984 6.71 -- -- -- --
121.97 0.514 3.11 0.0138 -- -0.0947 -- -- -0.0983 -- 21.24 13 -- --
119.56 0.509 3.12 -- 0.427 -0.411 -- -- -0.119 0.706 17.55 17 -- --
122.71 0.518 3.11 0.0142 -- -- -- -- -0.0969 -- -- -- -- --
122.39 0.517 3.11 -- 0.0793 -- -- -- -0.0998 6.7 -- -- -- --
121.98 0.514 3.11 -- -- -0.0951 -- -- -0.0998 -- 21.5 13 -- --
122.72 0.517 3.11 -- -- -- -- -- -0.0985 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.82 atmosphere 1005.0 90 < th dose dependent rect. 20 1
3 105.62 atmosphere 1005.0 10 < th dose dependent rect. 22 1
14 111.95 radiation 20.0 30 > th dose independent rect. 7 1
30 112.25 radiation 10.0 30 > th dose dependent rect. 6 2
93 113.35 wind 3.0 270 < th dose dependent rect. 18 2
94 113.45 temperature 25.0 10 > th dose independent rect. 7 1
95 113.45 temperature 25.0 30 > th dose dependent rect. 7 1
108 113.92 wind 3.0 270 < th dose independent rect. 18 2
166 114.42 temperature 30.0 90 > th dose dependent rect. 12 1
192 114.68 humidity 90.0 10 > th dose independent rect. 22 1
232 114.82 atmosphere 1005.0 90 < th dose independent rect. 20 1
256 115.04 humidity 90.0 90 > th dose independent rect. 20 3
260 115.15 humidity 90.0 90 > th dose independent rect. 20 1
272 115.24 temperature 25.0 30 > th dose dependent rect. 22 10
322 115.56 radiation 40.0 10 > th dose independent rect. 14 1
361 115.58 atmosphere 1005.0 90 < th dose independent rect. 6 1
419 115.80 temperature 30.0 1440 > th dose dependent rect. 8 1
459 115.96 temperature 25.0 30 > th dose dependent rect. 20 12
477 116.07 humidity 80.0 90 > th dose dependent rect. 20 3
478 116.10 temperature 30.0 720 < th dose independent rect. 8 1
550 116.48 wind 3.0 10 < th dose independent rect. 21 1
577 116.60 precipitation 0.1 720 > th dose independent rect. 15 1
578 116.60 precipitation 0.1 720 > th dose dependent rect. 15 1
581 116.65 temperature 30.0 10 > th dose dependent rect. 14 1
596 116.66 wind 5.0 90 < th dose independent rect. 20 12
600 116.74 wind 9.0 720 < th dose dependent rect. 19 3
602 116.75 radiation 20.0 10 > th dose independent sin 11 NA
613 116.84 temperature 15.0 90 > th dose independent rect. 8 12
618 116.85 wind 9.0 90 < th dose independent rect. 8 12
619 116.86 wind 1.0 720 > th dose independent rect. 7 3
626 116.89 radiation 10.0 30 < th dose dependent rect. 22 22
627 116.90 radiation 20.0 10 < th dose independent sin 11 NA
630 116.93 precipitation 0.1 90 < th dose independent rect. 20 12
632 116.93 precipitation 0.1 90 < th dose dependent rect. 20 12
633 116.94 humidity 60.0 90 < th dose independent rect. 12 1
634 116.94 temperature 10.0 90 > th dose dependent rect. 20 12
635 116.96 wind 3.0 720 > th dose independent rect. 14 6
642 117.00 wind 9.0 10 < th dose independent rect. 8 12
646 117.01 radiation 1.0 720 > th dose independent rect. 8 1
648 117.03 wind 3.0 10 < th dose independent rect. 7 1
650 117.04 wind 1.0 4320 < th dose dependent rect. 6 2
653 117.05 temperature 30.0 4320 > th dose independent rect. 8 1
675 117.09 temperature 10.0 90 > th dose independent rect. 20 12
676 117.09 temperature 30.0 90 < th dose independent rect. 20 12
677 117.09 humidity 50.0 90 > th dose independent rect. 20 12
679 117.09 atmosphere 995.0 90 > th dose independent rect. 20 12
680 117.09 atmosphere 1015.0 90 < th dose independent rect. 8 12
690 117.12 radiation 40.0 90 < th dose independent rect. 20 12
692 117.13 temperature 30.0 30 > th dose independent rect. 13 1
695 117.14 wind 1.0 720 > th dose independent rect. 20 1
696 117.14 humidity 50.0 14400 > th dose independent rect. 21 12
704 117.17 precipitation 0.1 720 < th dose independent rect. 20 1
718 117.17 precipitation 0.1 720 < th dose dependent rect. 20 1
721 117.19 temperature 10.0 720 > th dose independent rect. 20 1
722 117.19 temperature 30.0 720 < th dose independent rect. 20 1
723 117.19 humidity 50.0 720 > th dose independent rect. 20 1
726 117.19 atmosphere 995.0 720 > th dose independent rect. 20 1
727 117.19 radiation 1.0 720 < th dose independent rect. 20 1
732 117.19 temperature 15.0 720 > th dose independent rect. 8 2
734 117.19 temperature 10.0 720 > th dose independent rect. 21 23
735 117.19 radiation 1.0 720 < th dose dependent rect. 20 1
742 117.22 humidity 60.0 720 > th dose independent rect. 8 1
743 117.22 temperature 10.0 1440 > th dose independent rect. 9 12
746 117.22 temperature 10.0 1440 > th dose independent rect. 21 12
749 117.22 humidity 50.0 1440 > th dose independent rect. 21 12
751 117.22 atmosphere 995.0 1440 > th dose independent rect. 21 12
770 117.24 humidity 80.0 10 > th dose dependent rect. 20 4
772 117.25 wind 9.0 720 < th dose independent rect. 8 1
776 117.25 atmosphere 995.0 720 > th dose independent rect. 8 1
777 117.25 atmosphere 1015.0 720 < th dose independent rect. 8 1
780 117.25 temperature 10.0 720 > th dose independent rect. 9 23
781 117.25 atmosphere 1005.0 270 < th dose dependent rect. 18 1
791 117.27 precipitation 0.1 720 < th dose independent rect. 8 1
793 117.27 precipitation 0.1 720 < th dose dependent rect. 8 1
813 117.32 humidity 90.0 30 < th dose independent rect. 6 2
814 117.32 humidity 70.0 270 > th dose dependent rect. 18 4
816 117.33 precipitation 0.1 270 < th dose independent rect. 3 11
818 117.33 radiation 10.0 30 < th dose independent rect. 22 22
820 117.33 precipitation 0.1 270 < th dose dependent rect. 3 11
829 117.36 precipitation 0.1 10 < th dose independent rect. 8 12
830 117.36 precipitation 0.1 10 < th dose dependent rect. 8 12
852 117.38 humidity 50.0 720 > th dose dependent rect. 20 1
860 117.40 wind 1.0 720 < th dose dependent rect. 2 1
882 117.46 atmosphere 995.0 90 > th dose independent rect. 8 12
885 117.47 radiation 40.0 720 < th dose independent rect. 8 1
893 117.48 temperature 20.0 30 > th dose dependent rect. 21 1
952 117.54 precipitation 0.1 720 < th dose independent rect. 10 22
957 117.54 precipitation 0.1 720 < th dose dependent rect. 10 22
958 117.55 temperature 30.0 4320 < th dose independent rect. 21 12
964 117.55 wind 9.0 10 < th dose dependent rect. 20 13
966 117.56 atmosphere 1015.0 720 < th dose independent rect. 20 1