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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0411300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0294) R2 : 0.00302
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0728 (0.0619) R2dN8 : 0.0039 R2N8 : 0.00302
σ : 0.554
deviance : 140.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.47 0.547 2.8 0.37 0.214 -0.451 0.0468 1.3 0.17 10.8 24.54 11 -- --
136.04 0.543 2.81 0.228 0.217 -0.358 0.202 -- 0.142 10.5 22.27 12 -- --
135.47 0.542 2.8 0.377 0.214 -0.459 -- 1.36 0.171 10.9 24.6 11 -- --
136.2 0.544 2.81 0.227 0.207 -0.347 -- -- 0.144 10.5 22.3 12 -- --
137.97 0.547 2.81 0.321 -- -0.32 -- 1.08 0.152 -- 24.57 12 -- --
137.78 0.55 2.82 0.148 0.188 -- 0.343 -- 0.0882 7.71 -- -- -- --
138.11 0.55 2.82 0.157 0.188 -- -- -- 0.0879 7.87 -- -- -- --
137.04 0.545 2.82 0.246 -- -0.329 -- -- 0.144 -- 22.65 519 -- --
137.48 0.549 2.82 -- 0.197 -0.275 -- -- 0.108 9.92 22.3 12 -- --
140.02 0.553 2.83 0.159 -- -- -- -- 0.0904 -- -- -- -- --
138.76 0.551 2.83 -- 0.189 -- -- -- 0.0704 7.81 -- -- -- --
138.35 0.548 2.82 -- -- -0.283 -- -- 0.107 -- 22.8 504 -- --
140.69 0.554 2.83 -- -- -- -- -- 0.0728 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.56 atmosphere 1000.0 10 < th dose independent rect. 7 1
8 128.56 atmosphere 1000.0 10 < th dose dependent rect. 7 1
16 128.58 wind 1.0 10 < th dose dependent rect. 7 1
18 128.59 wind 1.0 10 < th dose independent rect. 7 1
19 128.62 humidity 70.0 10 < th dose independent rect. 7 1
82 128.62 humidity 70.0 10 < th dose dependent rect. 7 1
172 130.27 atmosphere 1005.0 30 > th dose dependent rect. 2 1
173 130.29 atmosphere 1000.0 30 > th dose independent rect. 3 23
174 130.29 temperature 20.0 30 > th dose dependent rect. 2 1
175 130.30 atmosphere 1005.0 30 > th dose independent rect. 2 1
176 130.30 wind 3.0 30 < th dose dependent rect. 2 1
178 130.32 temperature 20.0 30 > th dose independent rect. 2 1
183 130.33 wind 1.0 30 < th dose independent rect. 2 1
189 130.34 humidity 80.0 30 > th dose independent rect. 2 1
192 130.34 humidity 70.0 30 > th dose dependent rect. 2 1
196 130.35 temperature 10.0 30 > th dose independent rect. 2 1
198 130.35 temperature 30.0 30 < th dose independent rect. 2 1
199 130.35 humidity 50.0 30 > th dose independent rect. 2 1
203 130.35 atmosphere 1010.0 30 < th dose independent rect. 2 1
205 130.35 radiation 1.0 30 < th dose independent rect. 2 1
210 130.35 precipitation 0.1 30 < th dose independent rect. 2 1
211 130.35 temperature 10.0 30 > th dose independent rect. 3 23
212 130.35 humidity 50.0 30 > th dose dependent rect. 2 1
214 130.35 radiation 1.0 30 < th dose dependent rect. 2 1
219 130.35 precipitation 0.1 30 < th dose dependent rect. 2 1
222 130.42 atmosphere 1015.0 30 < th dose dependent rect. 2 1
226 130.43 temperature 30.0 30 < th dose dependent rect. 2 1
227 130.44 precipitation 0.1 30 < th dose independent rect. 3 23
228 130.44 radiation 1.0 14400 < th dose dependent rect. 3 1
229 130.44 precipitation 0.1 30 < th dose dependent rect. 3 23
236 130.51 wind 1.0 30 > th dose independent rect. 2 1
286 130.67 humidity 90.0 4320 < th dose dependent rect. 4 1
298 130.68 wind 9.0 1440 < th dose independent rect. 3 1
299 130.68 temperature 10.0 1440 > th dose independent rect. 3 1
302 130.68 temperature 30.0 1440 < th dose independent rect. 3 1
306 130.68 humidity 50.0 1440 > th dose independent rect. 3 1
315 130.68 atmosphere 995.0 1440 > th dose independent rect. 3 1
316 130.68 radiation 1.0 1440 < th dose independent rect. 3 1
336 130.68 temperature 10.0 1440 > th dose independent rect. 4 23
351 130.82 humidity 80.0 4320 < th dose independent rect. 4 1
359 131.05 wind 9.0 30 < th dose independent rect. 3 23
375 131.22 wind 3.0 10 > th dose dependent rect. 6 1
393 131.90 humidity 50.0 30 > th dose independent rect. 3 23
402 132.04 atmosphere 1015.0 30 < th dose independent rect. 3 23
403 132.05 wind 3.0 10 > th dose independent rect. 5 2
409 132.09 temperature 10.0 30 > th dose dependent rect. 3 23
423 132.24 humidity 50.0 4320 > th dose dependent rect. 4 1
444 132.55 precipitation 0.1 270 > th dose independent rect. 8 1
445 132.55 precipitation 0.1 270 > th dose dependent rect. 8 1
450 132.63 wind 1.0 10 < th dose independent rect. 6 6
478 132.82 humidity 90.0 720 < th dose dependent rect. 4 1
482 132.90 humidity 80.0 720 < th dose independent rect. 5 1
501 132.96 wind 1.0 10 < th dose dependent rect. 6 6
515 133.08 radiation 30.0 10 > th dose independent rect. 7 1
676 133.71 wind 1.0 10 < th dose independent rect. 6 21
679 133.72 temperature 20.0 720 > th dose dependent rect. 3 1
680 133.72 wind 3.0 30 < th dose dependent rect. 7 20
715 133.87 temperature 30.0 30 < th dose independent rect. 3 23
745 133.96 atmosphere 1000.0 270 < th dose independent rect. 4 1
746 133.96 atmosphere 1000.0 270 < th dose dependent rect. 4 1
762 134.00 wind 3.0 30 < th dose dependent rect. 11 16
776 134.04 temperature 30.0 10 < th dose independent rect. 5 22
789 134.07 temperature 25.0 10 > th dose independent rect. 12 23
791 134.09 wind 1.0 30 < th dose independent rect. 2 4
804 134.12 wind 3.0 30 < th dose dependent rect. 22 5
823 134.17 wind 9.0 4320 > th dose dependent rect. 18 20
830 134.19 wind 1.0 30 > th dose independent rect. 3 23
850 134.22 humidity 80.0 30 > th dose independent rect. 3 5
853 134.22 wind 1.0 10 > th dose independent rect. 12 17
866 134.23 wind 9.0 4320 > th dose dependent rect. 20 18
871 134.25 humidity 80.0 720 > th dose independent rect. 23 4
883 134.28 wind 1.0 10 < th dose independent rect. 11 16
885 134.28 wind 9.0 10 < th dose dependent rect. 5 22
894 134.30 wind 1.0 4320 < th dose dependent rect. 16 5
896 134.31 temperature 25.0 30 < th dose independent rect. 9 18
921 134.36 temperature 25.0 30 < th dose dependent rect. 9 6
962 134.43 temperature 30.0 10 < th dose dependent rect. 5 22