Os04g0411200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0411200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.07 | 0.835 | 3.77 | 0.643 | 0.575 | -2.53 | 0.688 | -5.84 | -0.000725 | 10.6 | 0.7717 | 10079 | -- | -- |
| 350.79 | 0.872 | 3.66 | 1.91 | 0.192 | -2.2 | 0.209 | -- | 0.23 | 10.3 | 0.68 | 8315 | -- | -- |
| 317.18 | 0.829 | 3.77 | 0.698 | 0.442 | -2.54 | -- | -5.79 | 0.00408 | 10.4 | 0.7411 | 9997 | -- | -- |
| 337.19 | 0.855 | 3.59 | 1.97 | 0.253 | -2.03 | -- | -- | 0.268 | 10.6 | 0.7959 | 18361 | -- | -- |
| 321.71 | 0.835 | 3.82 | 0.837 | -- | -2.62 | -- | -5.71 | -0.00798 | -- | 0.6596 | 12623 | -- | -- |
| 397.5 | 0.935 | 3.72 | 1.35 | 0.63 | -- | 0.785 | -- | -0.18 | 11 | -- | -- | -- | -- |
| 400.11 | 0.937 | 3.72 | 1.39 | 0.626 | -- | -- | -- | -0.177 | 10.9 | -- | -- | -- | -- |
| 336.72 | 0.855 | 3.58 | 2.47 | -- | -2.27 | -- | -- | 0.521 | -- | 0.7938 | 18369 | -- | -- |
| 434.15 | 0.97 | 3.6 | -- | 0.521 | -1.33 | -- | -- | 0.277 | 11 | 2.251 | 14087 | -- | -- |
| 424.48 | 0.963 | 3.74 | 1.37 | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
| 450.75 | 0.993 | 3.76 | -- | 0.615 | -- | -- | -- | -0.331 | 10.8 | -- | -- | -- | -- |
| 439.23 | 0.976 | 3.6 | -- | -- | -1.28 | -- | -- | 0.127 | -- | 2.33 | 14080 | -- | -- |
| 474.16 | 1.02 | 3.77 | -- | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 302.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 302.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 5 | 303.45 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 11 | 303.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 14 | 303.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 10 |
| 16 | 303.98 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 28 | 304.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 35 | 304.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 37 | 304.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 51 | 304.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 53 | 304.91 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 60 | 305.00 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 69 | 305.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 107 | 305.36 | humidity | 90 | 43200 | > th | dose dependent | sin | 9 | NA |
| 160 | 305.62 | radiation | 1 | 43200 | < th | dose dependent | sin | 11 | NA |
| 205 | 305.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 244 | 306.11 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 246 | 306.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 268 | 306.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 269 | 306.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 271 | 306.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 275 | 306.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 305 | 306.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 308 | 306.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 16 |
| 327 | 306.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 371 | 306.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 21 |
| 379 | 306.48 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 415 | 306.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 443 | 306.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 527 | 307.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 549 | 307.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 606 | 307.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 673 | 307.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 724 | 307.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 801 | 308.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 813 | 308.19 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 842 | 308.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 844 | 308.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 846 | 308.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 21 |
| 851 | 308.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 862 | 308.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 877 | 308.70 | humidity | 90 | 43200 | > th | dose independent | sin | 10 | NA |
| 880 | 308.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 891 | 308.78 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 959 | 309.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 994 | 309.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |