Os04g0410600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0410600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Purple acid phosphatase.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.6	(0.0724)	R²	:	0.447
β₁	:	-3.49	(0.273)	R²_dD	:	0.235	R²_D	:	-0.00312
β₂	:	0.699	(0.176)	R²_dC	:	0.019	R²_C	:	0.00215
β₃	:	3.04	(0.314)	R²_dE	:	0.182	R²_E	:	0.139
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-1.23	(0.173)	R²_dN8	:	0.113	R²_N8	:	0.165
σ	:	1.3
deviance	:	783.91
__

_____

C
peak time of C	:	8.58
E
wheather	:	humidity
threshold	:	90.83
memory length	:	4563
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	5.95
open length of G	:	2.53

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
775.99	1.31	6.55	-3.72	0.722	2.88	0.00488	2.79	-1.3	8.67	90.85	4539	5.93	2.55
784.04	1.3	6.6	-3.55	0.686	3.03	0.201	--	-1.23	8.55	90.84	4570	5.9	2.58
773.64	1.3	6.54	-3.82	0.72	2.9	--	2.92	-1.27	8.77	90.78	4547	5.82	2.67
783.91	1.3	6.6	-3.49	0.699	3.04	--	--	-1.23	8.58	90.83	4563	5.95	2.53
799.38	1.32	6.54	-3.88	--	3.03	--	3.12	-1.22	--	90.72	4573	5.8	2.67
943.89	1.44	6.79	-2.58	0.873	--	0.407	--	-2.09	8.34	--	--	--	--
944.28	1.44	6.79	-2.56	0.869	--	--	--	-2.09	8.54	--	--	--	--
809.36	1.33	6.61	-3.59	--	3.17	--	--	-1.17	--	90.82	4587	5.88	2.58
1012.44	1.48	6.61	--	0.803	2.88	--	--	-1.2	8.52	91.16	4556	6.62	2.58
986.62	1.47	6.81	-2.56	--	--	--	--	-2.08	--	--	--	--	--
1117.29	1.56	6.73	--	0.861	--	--	--	-1.8	8.76	--	--	--	--
946.17	1.43	6.64	--	--	2.77	--	--	-1.28	--	92.44	16613	6.88	2.47
1159.32	1.59	6.75	--	--	--	--	--	-1.79	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	782.45	humidity	90	4320	> th	dose independent	rect.	6	3
8	795.72	atmosphere	1005	4320	> th	dose independent	rect.	19	2
9	796.64	humidity	90	4320	> th	dose dependent	rect.	5	5
11	798.10	atmosphere	1005	4320	> th	dose independent	rect.	13	1
15	799.04	humidity	90	4320	> th	dose dependent	rect.	5	8
17	799.40	atmosphere	1005	4320	< th	dose independent	rect.	13	1
23	800.35	humidity	90	4320	> th	dose independent	rect.	5	8
26	800.60	atmosphere	1005	4320	> th	dose independent	rect.	9	5
35	801.81	wind	3	14400	> th	dose independent	rect.	8	1
42	802.38	atmosphere	1005	4320	< th	dose independent	rect.	19	1
46	802.74	atmosphere	1005	4320	> th	dose independent	rect.	19	20
50	803.05	atmosphere	1005	4320	< th	dose independent	rect.	7	7
61	803.37	atmosphere	1005	4320	< th	dose independent	rect.	9	5
87	804.30	atmosphere	1005	4320	> th	dose independent	rect.	2	20
118	804.80	atmosphere	1005	4320	< th	dose independent	rect.	18	21
120	804.81	atmosphere	1005	4320	> th	dose independent	rect.	18	10
136	805.03	atmosphere	1005	4320	< th	dose independent	rect.	2	20
164	805.28	atmosphere	1005	4320	> th	dose independent	rect.	9	21
181	805.38	atmosphere	1005	4320	> th	dose independent	rect.	9	19
195	805.49	atmosphere	1005	4320	> th	dose independent	rect.	12	23
196	805.50	atmosphere	1005	4320	> th	dose independent	rect.	5	23
211	805.62	atmosphere	1005	4320	> th	dose independent	no	NA	NA
254	805.93	atmosphere	1005	4320	> th	dose independent	sin	2	NA
266	806.00	atmosphere	1005	4320	< th	dose independent	sin	2	NA
288	806.16	atmosphere	1005	4320	> th	dose independent	rect.	12	18
291	806.19	atmosphere	1005	270	> th	dose independent	rect.	14	19
343	806.49	atmosphere	1005	4320	< th	dose independent	rect.	8	22
345	806.51	atmosphere	1005	4320	< th	dose independent	rect.	5	23
351	806.53	atmosphere	1005	4320	< th	dose independent	rect.	12	23
362	806.59	atmosphere	1005	4320	< th	dose independent	no	NA	NA
364	806.60	atmosphere	1005	4320	> th	dose independent	sin	14	NA
452	807.08	atmosphere	1005	4320	< th	dose independent	rect.	21	23
617	808.24	atmosphere	1005	4320	< th	dose independent	rect.	17	13
618	808.25	atmosphere	1005	4320	< th	dose independent	sin	16	NA
774	809.43	atmosphere	1005	10	> th	dose independent	rect.	18	18
898	811.21	atmosphere	1000	30	> th	dose dependent	rect.	4	16
913	811.50	wind	3	14400	< th	dose independent	rect.	8	1
967	812.76	humidity	90	4320	> th	dose dependent	sin	2	NA
979	813.00	atmosphere	1005	10	> th	dose independent	rect.	15	21