Os04g0409200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amylose extender starch-branching enzyme (Fragment).
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Os04g0409200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amylose extender starch-branching enzyme (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.83 | 0.63 | 9.95 | -1.33 | 2.98 | -1.23 | -0.0902 | -1.48 | -1.23 | 12.3 | 74 | 923 | -- | -- |
| 183.46 | 0.631 | 9.95 | -1.4 | 2.98 | -1.2 | -0.445 | -- | -1.26 | 12.4 | 74 | 944 | -- | -- |
| 179.79 | 0.625 | 9.95 | -1.33 | 2.99 | -1.21 | -- | -1.52 | -1.24 | 12.4 | 73.84 | 938 | -- | -- |
| 184.01 | 0.632 | 9.96 | -1.49 | 2.99 | -1.25 | -- | -- | -1.27 | 12.4 | 73 | 936 | -- | -- |
| 363.6 | 0.893 | 10 | -1.55 | -- | -1.62 | -- | 0.395 | -1.27 | -- | 73.84 | 938 | -- | -- |
| 218.35 | 0.693 | 9.96 | -1.3 | 2.57 | -- | -0.547 | -- | -1.18 | 12.9 | -- | -- | -- | -- |
| 219.61 | 0.694 | 9.96 | -1.32 | 2.57 | -- | -- | -- | -1.18 | 12.9 | -- | -- | -- | -- |
| 351.3 | 0.877 | 9.99 | -1.55 | -- | -1.59 | -- | -- | -1.17 | -- | 78.98 | 1661 | -- | -- |
| 241.46 | 0.724 | 9.96 | -- | 2.96 | -1.07 | -- | -- | -1.13 | 12.4 | 73 | 937 | -- | -- |
| 631.94 | 1.17 | 10 | -1.41 | -- | -- | -- | -- | -1.23 | -- | -- | -- | -- | -- |
| 265.29 | 0.762 | 9.93 | -- | 2.59 | -- | -- | -- | -1.03 | 12.9 | -- | -- | -- | -- |
| 414.64 | 0.951 | 9.95 | -- | -- | -1.56 | -- | -- | -0.998 | -- | 78.98 | 1661 | -- | -- |
| 684.51 | 1.22 | 9.97 | -- | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.96 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 14 |
| 3 | 173.43 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 6 |
| 5 | 174.15 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 11 | 175.20 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 16 | 175.67 | humidity | 70.0 | 720 | < th | dose independent | rect. | 13 | 20 |
| 69 | 177.63 | humidity | 70.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 74 | 177.88 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 10 | 11 |
| 84 | 178.46 | humidity | 70.0 | 720 | > th | dose independent | rect. | 11 | 18 |
| 110 | 179.07 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 112 | 179.15 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 127 | 179.70 | humidity | 70.0 | 720 | > th | dose independent | sin | 18 | NA |
| 128 | 179.70 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 136 | 179.90 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 148 | 180.20 | humidity | 70.0 | 720 | > th | dose independent | rect. | 1 | 19 |
| 150 | 180.21 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 153 | 180.24 | humidity | 70.0 | 720 | < th | dose independent | sin | 16 | NA |
| 185 | 180.72 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 186 | 180.77 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 192 | 180.88 | humidity | 60.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 199 | 180.95 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 15 |
| 228 | 181.30 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 239 | 181.43 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 249 | 181.55 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 339 | 182.37 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 341 | 182.37 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 375 | 182.60 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 379 | 182.63 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 389 | 182.74 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 8 |
| 413 | 182.97 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 448 | 183.25 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 511 | 183.88 | humidity | 90.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 574 | 184.41 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 643 | 185.03 | radiation | 10.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 688 | 185.38 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 691 | 185.39 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 13 |
| 695 | 185.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 11 |
| 786 | 185.88 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 798 | 185.93 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 813 | 186.04 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 872 | 186.35 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 11 |
| 887 | 186.45 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 905 | 186.53 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 909 | 186.55 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 930 | 186.62 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 934 | 186.64 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 944 | 186.71 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 958 | 186.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 983 | 186.90 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |