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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0407900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrom P450-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0787) R2 : 0.237
β1 : -2.55 (0.29) R2dD : 0.134 R2D : 0.063
β2 : 0.647 (0.194) R2dC : 0.0156 R2C : -0.0262
β3 : 2.09 (0.239) R2dE : 0.15 R2E : 0.0534
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.894 (0.17) R2dN8 : 0.064 R2N8 : -0.00545
σ : 1.47
deviance : 991.48
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_____
C
peak time of C : 12
E
wheather : temperature
threshold : 24.76
memory length : 810
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.5
open length of G : 2.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
962.9 1.46 4.12 -3.82 0.592 3.31 -2.06 -10.8 -1.13 12.2 25.13 737 20.8 2.17
1008.09 1.48 4.09 -2.57 0.48 3.09 -1.72 -- -1.19 12 24.48 707 21.2 2.9
979.77 1.46 4.11 -3.83 0.574 3.47 -- -11.1 -1.07 11.7 25.32 740 20.7 2.43
991.48 1.47 3.98 -2.55 0.647 2.09 -- -- -0.894 12 24.76 810 19.5 2.9
997.86 1.47 4.11 -3.81 -- 3.32 -- -10.9 -0.965 -- 25.46 794 20.6 2.55
1107.23 1.56 3.92 -2.22 0.995 -- 0.759 -- -0.661 5.94 -- -- -- --
1107.98 1.56 3.92 -2.21 1 -- -- -- -0.663 6.33 -- -- -- --
1009.1 1.48 3.99 -2.51 -- 1.93 -- -- -0.883 -- 24.74 810 19.5 3.42
1155.51 1.58 3.93 -- 0.565 1.71 -- -- -0.614 10.4 24.83 794 19.6 3.15
1160.37 1.59 3.94 -2.19 -- -- -- -- -0.641 -- -- -- -- --
1236.98 1.65 3.86 -- 0.975 -- -- -- -0.416 6.45 -- -- -- --
1172.94 1.6 3.92 -- -- 1.7 -- -- -0.543 -- 24.99 806 19.6 3.29
1286.39 1.67 3.88 -- -- -- -- -- -0.399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 965.57 temperature 25 720 > th dose dependent rect. 21 2
2 971.52 temperature 25 720 > th dose dependent rect. 18 6
17 979.34 temperature 25 720 > th dose dependent rect. 18 14
38 989.75 temperature 30 720 > th dose dependent rect. 18 1
52 990.13 wind 1 90 < th dose independent rect. 4 1
56 991.06 wind 1 270 < th dose dependent rect. 4 1
57 991.12 humidity 50 1440 < th dose independent rect. 16 1
58 991.15 temperature 25 720 < th dose independent rect. 17 7
60 991.93 temperature 25 720 > th dose independent rect. 18 6
61 992.00 humidity 50 1440 < th dose dependent rect. 16 1
69 993.79 humidity 70 720 < th dose independent rect. 18 2
123 997.75 humidity 70 720 < th dose dependent rect. 19 1
155 999.41 temperature 25 720 > th dose dependent sin 12 NA
156 999.72 radiation 10 43200 < th dose independent rect. 6 1
180 1002.03 radiation 10 43200 < th dose independent rect. 17 15
191 1003.09 wind 7 43200 > th dose dependent rect. 13 2
195 1003.46 humidity 50 1440 > th dose independent rect. 16 1
203 1003.87 radiation 1 720 > th dose dependent rect. 18 1
213 1003.99 radiation 10 43200 < th dose independent rect. 3 4
215 1004.00 radiation 10 43200 < th dose independent rect. 20 11
218 1004.02 radiation 10 43200 < th dose independent rect. 1 6
221 1004.04 radiation 40 43200 < th dose independent rect. 15 19
222 1004.05 radiation 10 43200 < th dose independent rect. 22 9
227 1004.17 temperature 25 720 > th dose independent rect. 21 3
228 1004.39 wind 7 43200 < th dose independent rect. 13 1
229 1004.63 temperature 25 720 > th dose independent rect. 22 1
236 1004.88 wind 7 43200 > th dose independent rect. 13 2
244 1005.35 humidity 70 720 > th dose independent rect. 19 8
268 1006.13 radiation 40 43200 < th dose independent sin 11 NA
294 1007.56 radiation 1 43200 > th dose dependent rect. 5 1
295 1007.57 radiation 40 43200 > th dose dependent rect. 10 1
313 1008.51 radiation 40 43200 < th dose independent rect. 14 16
314 1008.52 radiation 40 43200 < th dose independent rect. 14 10
316 1008.55 radiation 40 43200 < th dose independent rect. 14 7
318 1008.56 radiation 40 43200 < th dose independent rect. 14 5
320 1008.58 radiation 40 43200 < th dose independent rect. 14 3
322 1008.59 radiation 40 43200 < th dose independent rect. 14 12
337 1009.11 radiation 40 43200 < th dose independent rect. 3 8
338 1009.11 radiation 40 43200 < th dose independent rect. 18 17
339 1009.12 radiation 40 43200 < th dose independent rect. 1 10
340 1009.12 radiation 40 43200 < th dose independent rect. 20 15
346 1009.14 radiation 40 43200 < th dose independent rect. 22 13
351 1009.17 radiation 40 43200 < th dose independent rect. 7 4
373 1009.66 radiation 20 43200 > th dose dependent rect. 16 16
437 1010.82 radiation 40 43200 > th dose dependent rect. 15 20
446 1011.02 radiation 40 43200 > th dose dependent rect. 7 4
471 1011.46 radiation 10 43200 > th dose dependent rect. 17 14
489 1011.55 radiation 40 43200 < th dose independent rect. 10 1
495 1011.73 temperature 25 720 < th dose independent rect. 19 1
509 1012.12 radiation 20 43200 < th dose independent rect. 16 1
511 1012.13 radiation 10 43200 < th dose independent sin 11 NA
519 1012.38 radiation 20 43200 < th dose independent rect. 16 8
521 1012.42 radiation 20 43200 < th dose independent rect. 16 5
523 1012.43 radiation 20 43200 < th dose independent rect. 16 3
526 1012.46 radiation 20 43200 < th dose independent rect. 16 10
590 1014.33 radiation 40 43200 < th dose dependent rect. 3 3
592 1014.42 humidity 90 90 > th dose dependent rect. 4 1
596 1014.49 temperature 25 720 < th dose independent sin 16 NA
626 1014.75 radiation 40 43200 < th dose dependent rect. 1 5
630 1014.83 temperature 20 90 > th dose independent rect. 4 1
648 1014.97 humidity 70 720 > th dose independent rect. 18 6
656 1015.11 radiation 40 43200 > th dose dependent sin 11 NA
659 1015.12 radiation 40 43200 < th dose dependent rect. 20 10
693 1015.44 radiation 10 43200 < th dose dependent rect. 20 10
727 1015.53 radiation 10 43200 < th dose dependent rect. 22 8
777 1015.96 temperature 30 720 > th dose independent rect. 18 1
825 1016.50 temperature 20 90 > th dose dependent rect. 4 1
864 1016.84 radiation 10 43200 < th dose dependent rect. 18 13
956 1017.90 humidity 80 43200 < th dose dependent rect. 21 2
975 1018.22 wind 1 90 < th dose dependent rect. 4 3
981 1018.29 humidity 80 43200 < th dose dependent rect. 21 12