Os04g0407800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os04g0407800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.17 | 0.355 | 9.59 | 1.26 | 0.681 | -0.824 | -0.23 | -0.487 | 0.449 | 0.998 | 69.76 | 1255 | -- | -- |
| 57.41 | 0.353 | 9.58 | 1.3 | 0.682 | -0.859 | -0.262 | -- | 0.465 | 0.962 | 71.49 | 1258 | -- | -- |
| 57.35 | 0.353 | 9.58 | 1.26 | 0.687 | -0.804 | -- | -0.623 | 0.461 | 0.994 | 71.35 | 1242 | -- | -- |
| 57.7 | 0.354 | 9.57 | 1.3 | 0.685 | -0.871 | -- | -- | 0.469 | 1.04 | 71.6 | 1257 | -- | -- |
| 78.58 | 0.415 | 9.55 | 1.18 | -- | -0.819 | -- | 0.157 | 0.535 | -- | 81 | 1638 | -- | -- |
| 73.97 | 0.403 | 9.55 | 1.12 | 0.561 | -- | -0.444 | -- | 0.561 | 0.899 | -- | -- | -- | -- |
| 74.79 | 0.405 | 9.55 | 1.14 | 0.562 | -- | -- | -- | 0.563 | 0.995 | -- | -- | -- | -- |
| 78.45 | 0.414 | 9.55 | 1.18 | -- | -0.814 | -- | -- | 0.535 | -- | 81.38 | 1630 | -- | -- |
| 99.99 | 0.466 | 9.58 | -- | 0.671 | -0.665 | -- | -- | 0.46 | 1.12 | 94 | 1274 | -- | -- |
| 94.46 | 0.454 | 9.54 | 1.16 | -- | -- | -- | -- | 0.574 | -- | -- | -- | -- | -- |
| 108.92 | 0.488 | 9.58 | -- | 0.581 | -- | -- | -- | 0.436 | 1.08 | -- | -- | -- | -- |
| 112.05 | 0.495 | 9.57 | -- | -- | -0.837 | -- | -- | 0.453 | -- | 171 | 5 | -- | -- |
| 129.89 | 0.532 | 9.57 | -- | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.97 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 3 | 56.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 10 | 56.35 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 17 | 56.41 | wind | 9.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 19 | 56.42 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 32 | 56.52 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 49 | 56.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 53 | 56.61 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 55 | 56.62 | wind | 9.0 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 65 | 56.64 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 66 | 56.64 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 71 | 56.64 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 76 | 56.65 | wind | 9.0 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 92 | 56.69 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 106 | 56.73 | wind | 9.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 112 | 56.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 116 | 56.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 123 | 56.76 | wind | 9.0 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 126 | 56.76 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 9 |
| 139 | 56.79 | wind | 9.0 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 144 | 56.80 | wind | 9.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 234 | 56.91 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 286 | 56.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 297 | 56.97 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 370 | 57.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 389 | 57.03 | wind | 9.0 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 408 | 57.04 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 415 | 57.05 | wind | 5.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 416 | 57.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 433 | 57.06 | wind | 9.0 | 43200 | < th | dose independent | no | NA | NA |
| 479 | 57.08 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 491 | 57.09 | wind | 9.0 | 43200 | > th | dose independent | no | NA | NA |
| 502 | 57.09 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 503 | 57.09 | wind | 7.0 | 43200 | > th | dose dependent | no | NA | NA |
| 527 | 57.11 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 545 | 57.13 | wind | 9.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 554 | 57.13 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 555 | 57.14 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 575 | 57.19 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 582 | 57.20 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 602 | 57.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 626 | 57.27 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 628 | 57.27 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 655 | 57.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 677 | 57.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 680 | 57.33 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 696 | 57.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 701 | 57.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 739 | 57.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 840 | 57.51 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 864 | 57.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 876 | 57.55 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 886 | 57.56 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 916 | 57.58 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 981 | 57.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 12 |