Os04g0407300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0407300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 251.25 | 0.745 | 3.68 | -0.283 | 0.0619 | 0.559 | -0.866 | -0.649 | 0.264 | 5.05 | 22 | 780 | -- | -- |
| 252.22 | 0.74 | 3.66 | -0.0667 | 0.11 | 0.557 | -0.783 | -- | 0.321 | 4.41 | 22 | 593 | -- | -- |
| 253.1 | 0.741 | 3.67 | -0.239 | 0.0608 | 0.563 | -- | -0.51 | 0.278 | 4.77 | 21.92 | 759 | -- | -- |
| 253.83 | 0.742 | 3.65 | -0.0752 | 0.102 | 0.549 | -- | -- | 0.321 | 3.68 | 22 | 593 | -- | -- |
| 253.27 | 0.741 | 3.67 | -0.241 | -- | 0.561 | -- | -0.523 | 0.279 | -- | 21.95 | 776 | -- | -- |
| 266.15 | 0.765 | 3.62 | 0.0955 | 0.0873 | -- | -0.712 | -- | 0.49 | 3.08 | -- | -- | -- | -- |
| 267.4 | 0.766 | 3.62 | 0.111 | 0.115 | -- | -- | -- | 0.495 | 23.8 | -- | -- | -- | -- |
| 254.17 | 0.743 | 3.66 | -0.0808 | -- | 0.564 | -- | -- | 0.3 | -- | 21.9 | 758 | -- | -- |
| 253.97 | 0.742 | 3.65 | -- | 0.0984 | 0.536 | -- | -- | 0.332 | 3.57 | 21.98 | 593 | -- | -- |
| 268.23 | 0.765 | 3.61 | 0.114 | -- | -- | -- | -- | 0.496 | -- | -- | -- | -- | -- |
| 267.73 | 0.765 | 3.62 | -- | 0.116 | -- | -- | -- | 0.483 | 23.9 | -- | -- | -- | -- |
| 254.29 | 0.743 | 3.65 | -- | -- | 0.553 | -- | -- | 0.33 | -- | 21.99 | 758 | -- | -- |
| 268.58 | 0.765 | 3.62 | -- | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 249.46 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 2 | 249.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 5 | 251.27 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 13 | 251.87 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 17 | 252.13 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 20 | 252.23 | humidity | 90.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 23 | 252.40 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 8 | 5 |
| 27 | 252.47 | wind | 3.0 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 31 | 252.64 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 34 | 252.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 13 |
| 39 | 252.70 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 45 | 252.78 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 20 | 2 |
| 48 | 252.79 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 20 | 2 |
| 50 | 252.81 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 54 | 252.82 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 75 | 252.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 80 | 252.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 4 |
| 81 | 252.98 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 85 | 253.03 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 89 | 253.04 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 7 | 9 |
| 91 | 253.07 | wind | 1.0 | 90 | < th | dose dependent | rect. | 17 | 4 |
| 93 | 253.09 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 3 |
| 99 | 253.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 106 | 253.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 11 |
| 109 | 253.19 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 113 | 253.22 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 114 | 253.23 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 144 | 253.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 21 |
| 160 | 253.41 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 181 | 253.48 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 2 | 11 |
| 206 | 253.66 | wind | 3.0 | 90 | < th | dose independent | rect. | 18 | 3 |
| 207 | 253.67 | temperature | 10.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 225 | 253.72 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 235 | 253.75 | wind | 9.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 246 | 253.80 | temperature | 20.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 261 | 253.88 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 284 | 253.95 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 290 | 253.98 | temperature | 20.0 | 720 | > th | dose independent | sin | 11 | NA |
| 291 | 253.98 | temperature | 20.0 | 720 | < th | dose independent | sin | 10 | NA |
| 353 | 254.15 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 3 | 12 |
| 360 | 254.17 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 24 | 13 |
| 361 | 254.17 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 17 |
| 372 | 254.19 | temperature | 15.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 392 | 254.23 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 401 | 254.24 | wind | 9.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 404 | 254.25 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 428 | 254.29 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 431 | 254.30 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 475 | 254.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 479 | 254.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 503 | 254.42 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 21 |
| 508 | 254.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 509 | 254.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 515 | 254.45 | wind | 9.0 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 567 | 254.52 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 599 | 254.59 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 609 | 254.61 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 21 | 1 |
| 624 | 254.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 629 | 254.64 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 636 | 254.64 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 639 | 254.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 645 | 254.66 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 649 | 254.67 | wind | 9.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 650 | 254.67 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 657 | 254.68 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 677 | 254.73 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 678 | 254.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 683 | 254.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 709 | 254.76 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 759 | 254.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 760 | 254.83 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 14 |
| 762 | 254.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 21 |
| 766 | 254.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 770 | 254.84 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 775 | 254.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 812 | 254.88 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 825 | 254.91 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 856 | 254.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 20 |
| 858 | 254.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 22 |
| 886 | 254.98 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 899 | 254.99 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 917 | 255.01 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 919 | 255.02 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 958 | 255.05 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 972 | 255.06 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |