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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0406300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.52 (0.0597) R2 : 0.375
β1 : -1.88 (0.345) R2dD : 0.165 R2D : -0.242
β2 : -- (--) R2dC : -- R2C : --
β3 : 3 (0.199) R2dE : 0.512 R2E : 0.198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.16 (1.3) R2dD*E : 0.0933 R2D*E : -0.196
γ1 : -0.904 (0.132) R2dN8 : 0.156 R2N8 : -0.0563
σ : 0.885
deviance : 361.3
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.56
memory length : 947
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.84 0.876 4.6 -2.51 0.945 2.78 0.435 -7.44 -0.998 0.41 24.65 1868 -- --
376 0.903 4.44 -1.13 0.904 2.62 0.0259 -- -0.821 23.5 16.56 3231 -- --
348.64 0.87 4.6 -2.49 0.945 2.77 -- -7.32 -0.987 0.38 24.68 1865 -- --
371.44 0.898 4.44 -1.01 0.923 2.42 -- -- -0.764 22.5 15.76 2675 -- --
361.3 0.885 4.52 -1.88 -- 3 -- -5.16 -0.904 -- 23.56 947 -- --
496.28 1.04 4.33 -0.0114 1.11 -- 0.322 -- -0.252 23.1 -- -- -- --
496.72 1.04 4.33 -0.0242 1.11 -- -- -- -0.253 23.1 -- -- -- --
377.4 0.905 4.38 -0.717 -- 2.6 -- -- -0.616 -- 23.59 933 -- --
380.65 0.909 4.36 -- 0.796 1.6 -- -- -0.477 22.4 22.6 2476 -- --
573.61 1.12 4.3 0.00179 -- -- -- -- -0.244 -- -- -- -- --
496.73 1.04 4.33 -- 1.11 -- -- -- -0.251 23.1 -- -- -- --
389.47 0.919 4.35 -- -- 2.43 -- -- -0.468 -- 24.14 933 -- --
573.61 1.12 4.3 -- -- -- -- -- -0.244 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 350.36 temperature 25 1440 > th dose dependent rect. 9 10
4 350.41 temperature 25 1440 > th dose dependent rect. 11 4
7 350.57 temperature 25 1440 > th dose dependent sin 22 NA
8 350.57 temperature 25 1440 > th dose dependent rect. 11 6
124 352.09 temperature 25 1440 > th dose dependent rect. 11 23
181 352.51 temperature 25 1440 > th dose dependent no NA NA
203 352.84 temperature 25 1440 > th dose dependent rect. 13 1
249 354.21 radiation 1 4320 > th dose independent rect. 18 11
269 354.73 radiation 1 4320 > th dose independent rect. 18 1
329 356.22 radiation 1 4320 < th dose independent rect. 18 11
342 356.67 radiation 1 4320 < th dose independent rect. 18 6
343 356.67 radiation 1 4320 < th dose independent rect. 18 8
355 356.96 radiation 1 4320 < th dose independent rect. 18 1
382 358.01 temperature 25 1440 > th dose dependent rect. 16 1
389 358.20 humidity 90 43200 > th dose independent rect. 9 2
423 359.20 humidity 90 43200 < th dose independent rect. 10 1
438 359.49 temperature 30 1440 < th dose independent rect. 10 6
475 360.41 humidity 80 43200 > th dose dependent rect. 10 1
565 361.76 humidity 80 43200 > th dose dependent rect. 10 3
569 361.81 temperature 30 1440 < th dose independent rect. 20 20
575 361.85 temperature 30 1440 < th dose independent rect. 5 11
580 361.90 temperature 30 1440 < th dose independent rect. 7 9
610 362.15 wind 3 43200 > th dose dependent rect. 10 2
614 362.24 wind 5 43200 < th dose independent rect. 10 2
640 362.52 wind 5 43200 > th dose independent rect. 10 2
643 362.56 humidity 90 43200 < th dose independent rect. 1 22
649 362.66 radiation 1 14400 < th dose independent rect. 5 1
652 362.70 humidity 90 43200 > th dose independent rect. 2 14
653 362.72 radiation 1 14400 > th dose independent rect. 5 1
677 362.98 temperature 30 1440 > th dose independent rect. 10 6
691 363.09 humidity 90 43200 > th dose independent rect. 2 21
717 363.28 humidity 90 43200 > th dose independent rect. 22 1
735 363.48 humidity 90 43200 > th dose independent rect. 2 17
761 363.67 radiation 10 14400 < th dose dependent rect. 18 11
763 363.69 humidity 90 43200 < th dose independent rect. 21 2
782 363.83 radiation 30 14400 > th dose independent rect. 16 16
790 363.86 humidity 90 43200 < th dose independent rect. 6 22
793 363.88 temperature 25 4320 < th dose independent rect. 6 7
807 363.95 radiation 40 14400 < th dose dependent rect. 18 8
820 364.03 humidity 90 43200 > th dose dependent rect. 22 1
824 364.06 radiation 1 4320 > th dose independent rect. 16 14
838 364.14 humidity 90 43200 > th dose independent sin 3 NA
840 364.14 radiation 20 14400 < th dose dependent rect. 18 4
865 364.25 radiation 1 4320 > th dose independent sin 13 NA
897 364.37 radiation 10 14400 < th dose dependent rect. 18 1
901 364.38 humidity 90 43200 < th dose independent sin 4 NA
915 364.44 humidity 90 43200 < th dose independent rect. 8 15
929 364.48 humidity 90 43200 < th dose independent rect. 2 14
930 364.48 radiation 1 14400 > th dose independent rect. 18 21
962 364.62 humidity 90 43200 < th dose independent rect. 17 23
981 364.70 radiation 1 14400 < th dose independent rect. 18 21
984 364.71 humidity 90 43200 < th dose independent no NA NA
997 364.76 humidity 90 43200 < th dose independent rect. 15 23