Os04g0405900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0405900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.68 | 0.669 | 12 | 1.45 | 0.725 | -2.9 | 0.64 | 1.32 | 1.17 | 20.9 | 10.23 | 242 | 0.482 | -- |
| 203.89 | 0.665 | 12 | 1.43 | 0.687 | -2.93 | 0.00649 | -- | 1.2 | 20.3 | 10.24 | 237 | 0.00554 | -- |
| 201.8 | 0.662 | 12 | 1.42 | 0.665 | -2.98 | -- | 0.753 | 1.16 | 20.3 | 10.22 | 233 | 0.00816 | -- |
| 202.64 | 0.663 | 12 | 1.42 | 0.655 | -2.98 | -- | -- | 1.17 | 20.3 | 10.03 | 231 | 0.0139 | -- |
| 212.21 | 0.678 | 12 | 1.43 | -- | -3.28 | -- | 0.746 | 1.16 | -- | 10.03 | 193 | 0.0292 | -- |
| 320.02 | 0.839 | 12 | 1.21 | 2.31 | -- | 0.448 | -- | 1.08 | 23.2 | -- | -- | -- | -- |
| 320.88 | 0.839 | 12 | 1.2 | 2.3 | -- | -- | -- | 1.08 | 23.2 | -- | -- | -- | -- |
| 213.35 | 0.68 | 12 | 1.44 | -- | -3.27 | -- | -- | 1.16 | -- | 10.03 | 193 | 3.09e-07 | -- |
| 253.05 | 0.741 | 12 | -- | 0.681 | -2.72 | -- | -- | 0.965 | 21.4 | 10.22 | 201 | 5.86e-06 | -- |
| 652.33 | 1.19 | 12 | 1.25 | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
| 358.52 | 0.886 | 12.1 | -- | 2.31 | -- | -- | -- | 0.949 | 23.2 | -- | -- | -- | -- |
| 265.03 | 0.758 | 12 | -- | -- | -2.98 | -- | -- | 0.934 | -- | 7.534 | 219 | 5.8e-08 | -- |
| 693.62 | 1.23 | 12 | -- | -- | -- | -- | -- | 0.964 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.48 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 5 | 200.67 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 6 |
| 7 | 201.50 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 6 |
| 22 | 202.88 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 30 | 204.78 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 7 |
| 36 | 205.99 | humidity | 90 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 40 | 206.44 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 16 |
| 48 | 207.44 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 55 | 208.08 | humidity | 60 | 10 | > th | dose dependent | sin | 2 | NA |
| 62 | 208.73 | humidity | 60 | 90 | > th | dose dependent | sin | 4 | NA |
| 93 | 210.28 | radiation | 10 | 270 | > th | dose independent | sin | 7 | NA |
| 94 | 210.28 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 21 |
| 109 | 210.56 | humidity | 90 | 10 | < th | dose dependent | sin | 3 | NA |
| 152 | 212.93 | radiation | 20 | 270 | < th | dose dependent | sin | 6 | NA |
| 164 | 213.37 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 165 | 213.38 | radiation | 1 | 90 | > th | dose dependent | sin | 5 | NA |
| 227 | 214.55 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 3 |
| 302 | 216.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 328 | 216.95 | radiation | 40 | 90 | < th | dose dependent | sin | 4 | NA |
| 349 | 217.64 | humidity | 80 | 90 | < th | dose independent | sin | 4 | NA |
| 355 | 218.15 | radiation | 1 | 270 | > th | dose dependent | sin | 9 | NA |
| 462 | 220.19 | humidity | 80 | 90 | > th | dose independent | sin | 3 | NA |
| 526 | 222.08 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 621 | 224.38 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 668 | 225.31 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 732 | 226.23 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 838 | 227.78 | temperature | 15 | 270 | > th | dose independent | rect. | 8 | 3 |
| 854 | 228.11 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 5 |
| 959 | 229.66 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 14 |