Os04g0405800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase).
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Os04g0405800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.55 | 0.26 | 12 | 0.313 | 0.788 | 0.322 | 0.456 | -0.662 | 0.508 | 1.32 | 18.75 | 1414 | -- | -- |
| 31.45 | 0.261 | 12 | 0.302 | 0.79 | 0.324 | 0.439 | -- | 0.51 | 1.33 | 14.57 | 1421 | -- | -- |
| 31.22 | 0.26 | 12 | 0.3 | 0.79 | 0.325 | -- | -0.772 | 0.503 | 1.34 | 18.64 | 1359 | -- | -- |
| 32.48 | 0.265 | 12 | 0.282 | 0.789 | 0.321 | -- | -- | 0.509 | 1.36 | 14.34 | 1421 | -- | -- |
| 34.22 | 0.272 | 12 | 0.2 | -- | 0.668 | -- | 0.0371 | 0.486 | -- | 1.891 | 212 | -- | -- |
| 35.12 | 0.278 | 12 | 0.215 | 0.763 | -- | 0.443 | -- | 0.41 | 1.34 | -- | -- | -- | -- |
| 35.92 | 0.281 | 12 | 0.2 | 0.763 | -- | -- | -- | 0.408 | 1.38 | -- | -- | -- | -- |
| 34.02 | 0.272 | 12 | 0.216 | -- | 0.647 | -- | -- | 0.445 | -- | 1.892 | 217 | -- | -- |
| 34.16 | 0.272 | 12 | -- | 0.803 | 0.315 | -- | -- | 0.51 | 1.3 | 19.67 | 1414 | -- | -- |
| 71.75 | 0.396 | 12 | 0.23 | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
| 36.98 | 0.284 | 12.1 | -- | 0.766 | -- | -- | -- | 0.385 | 1.39 | -- | -- | -- | -- |
| 35.45 | 0.277 | 12 | -- | -- | 0.641 | -- | -- | 0.407 | -- | 1.89 | 217 | -- | -- |
| 73.14 | 0.399 | 12 | -- | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.06 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 29.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 5 | 29.57 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 7 | 29.94 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 10 | 30.22 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 12 | 30.25 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 14 | 30.26 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 16 | 30.27 | radiation | 10 | 1440 | < th | dose independent | sin | 19 | NA |
| 26 | 30.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 35 | 30.30 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 67 | 30.38 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 99 | 30.42 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 120 | 30.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 123 | 30.47 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 154 | 30.53 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 181 | 30.56 | radiation | 20 | 1440 | < th | dose dependent | sin | 23 | NA |
| 195 | 30.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 196 | 30.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 265 | 30.66 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 305 | 30.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 314 | 30.69 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 370 | 30.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 371 | 30.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 377 | 30.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 20 |
| 378 | 30.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 411 | 30.74 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 500 | 30.74 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 606 | 30.77 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 768 | 30.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 769 | 30.81 | radiation | 1 | 1440 | > th | dose dependent | sin | 1 | NA |
| 809 | 30.83 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 10 |