Os04g0405300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Stem secoisolariciresinol dehydrogenase (Fragment).
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Os04g0405300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Stem secoisolariciresinol dehydrogenase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.93 | 0.648 | 10.4 | 0.0692 | 0.663 | 1.6 | -0.57 | -10.9 | 1.09 | 0.723 | 25.5 | 4725 | -- | -- |
| 214.62 | 0.682 | 10.1 | 1.45 | 0.631 | 1.44 | -0.559 | -- | 1.08 | 0.266 | 7.841 | 47520 | -- | -- |
| 190.15 | 0.642 | 10.4 | -0.276 | 0.681 | 1.88 | -- | -13.1 | 1.1 | 0.741 | 26.4 | 4736 | -- | -- |
| 213.97 | 0.681 | 10.1 | 1.52 | 0.642 | 1.45 | -- | -- | 1.1 | 0.371 | 7.738 | 41387 | -- | -- |
| 210.97 | 0.676 | 10.4 | -0.581 | -- | 2.21 | -- | -14.9 | 1.06 | -- | 26.48 | 3160 | -- | -- |
| 235.19 | 0.719 | 10 | 2.95 | 0.663 | -- | -0.5 | -- | 1.68 | 0.308 | -- | -- | -- | -- |
| 236.27 | 0.72 | 10 | 2.97 | 0.664 | -- | -- | -- | 1.68 | 0.308 | -- | -- | -- | -- |
| 234.76 | 0.714 | 10.1 | 1.66 | -- | 1.37 | -- | -- | 1.12 | -- | 8.324 | 29764 | -- | -- |
| 230.87 | 0.708 | 10.3 | -- | 0.614 | 2.48 | -- | -- | 0.611 | 0.256 | -16.72 | 47520 | -- | -- |
| 264.02 | 0.759 | 10 | 2.99 | -- | -- | -- | -- | 1.69 | -- | -- | -- | -- | -- |
| 468.39 | 1.01 | 10.1 | -- | 0.708 | -- | -- | -- | 1.35 | 0.529 | -- | -- | -- | -- |
| 254.56 | 0.743 | 10.2 | -- | -- | 2.52 | -- | -- | 0.607 | -- | -4.967 | 47520 | -- | -- |
| 499.81 | 1.04 | 10.1 | -- | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.27 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 13 | 177.80 | radiation | 10.0 | 90 | < th | dose independent | sin | 2 | NA |
| 14 | 177.85 | radiation | 10.0 | 270 | < th | dose independent | sin | 7 | NA |
| 20 | 178.70 | radiation | 10.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 21 | 178.72 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 28 | 179.17 | radiation | 20.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 32 | 179.53 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 53 | 181.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 65 | 181.94 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 67 | 182.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 110 | 183.70 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 111 | 183.78 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 140 | 184.69 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 151 | 185.05 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 195 | 186.31 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 217 | 186.80 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 231 | 187.09 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 243 | 187.27 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 275 | 187.95 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 293 | 188.24 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 294 | 188.25 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 297 | 188.28 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 309 | 188.43 | radiation | 1.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 328 | 188.66 | radiation | 20.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 335 | 188.77 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 336 | 188.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 339 | 188.80 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 344 | 188.84 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 354 | 188.90 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 358 | 188.91 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 363 | 188.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 404 | 189.19 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 420 | 189.29 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 422 | 189.29 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 465 | 189.59 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 481 | 189.66 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 499 | 189.77 | radiation | 20.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 513 | 189.89 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 552 | 190.07 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 580 | 190.22 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 23 |
| 588 | 190.25 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 592 | 190.26 | humidity | 50.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 616 | 190.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 639 | 190.51 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 659 | 190.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 668 | 190.66 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 713 | 190.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 715 | 190.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 719 | 190.80 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 742 | 190.90 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 754 | 190.97 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 774 | 191.05 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 789 | 191.08 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 15 |
| 790 | 191.08 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 810 | 191.13 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 822 | 191.17 | temperature | 15.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 851 | 191.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 854 | 191.23 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 860 | 191.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 863 | 191.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 865 | 191.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 882 | 191.30 | temperature | 15.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 898 | 191.34 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 937 | 191.41 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 950 | 191.42 | radiation | 20.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 963 | 191.45 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 983 | 191.49 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 990 | 191.51 | radiation | 10.0 | 90 | > th | dose independent | sin | 3 | NA |