Os04g0405100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sterile alpha motif SAM domain containing protein.
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Os04g0405100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sterile alpha motif SAM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.22 | 0.502 | 11.6 | 0.631 | 1.75 | 1.4 | 1.28 | -1.28 | -0.0751 | 18.8 | 19.83 | 98 | -- | -- |
| 115.51 | 0.501 | 11.6 | 0.849 | 1.76 | 1.34 | 1.13 | -- | -0.00687 | 18.7 | 19 | 109 | -- | -- |
| 118.1 | 0.506 | 11.6 | 0.689 | 1.76 | 1.38 | -- | -0.806 | -0.0454 | 18.6 | 19.28 | 109 | -- | -- |
| 118.65 | 0.507 | 11.6 | 0.828 | 1.75 | 1.35 | -- | -- | -0.00322 | 18.6 | 18.98 | 118 | -- | -- |
| 211.38 | 0.677 | 11.6 | 0.267 | -- | 2.59 | -- | -2.9 | -0.159 | -- | 24.1 | 325 | -- | -- |
| 142.61 | 0.56 | 11.5 | 1.14 | 2.11 | -- | 1.12 | -- | 0.218 | 18 | -- | -- | -- | -- |
| 145.56 | 0.565 | 11.5 | 1.13 | 2.11 | -- | -- | -- | 0.222 | 18 | -- | -- | -- | -- |
| 214.99 | 0.683 | 11.6 | 0.671 | -- | 2.37 | -- | -- | -0.0706 | -- | 24.1 | 323 | -- | -- |
| 134.64 | 0.54 | 11.6 | -- | 1.66 | 1.73 | -- | -- | -0.144 | 18.8 | 17.79 | 136 | -- | -- |
| 376.87 | 0.907 | 11.5 | 1.07 | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
| 179.44 | 0.627 | 11.6 | -- | 2.1 | -- | -- | -- | 0.096 | 18 | -- | -- | -- | -- |
| 226.38 | 0.701 | 11.6 | -- | -- | 2.47 | -- | -- | -0.168 | -- | 23.9 | 324 | -- | -- |
| 407.14 | 0.942 | 11.5 | -- | -- | -- | -- | -- | 0.055 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 11 | 105.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 17 | 106.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 22 | 106.97 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 23 | 106.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 33 | 107.68 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 36 | 107.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 40 | 108.14 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 54 | 108.68 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 123 | 110.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 194 | 111.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 206 | 111.41 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 259 | 112.18 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 13 |
| 261 | 112.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 372 | 113.51 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 398 | 113.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 425 | 114.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 432 | 114.24 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 441 | 114.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 446 | 114.38 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 461 | 114.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 586 | 115.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 618 | 115.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 623 | 115.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 692 | 116.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 701 | 116.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 815 | 116.91 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 19 |
| 826 | 116.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 836 | 117.02 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 21 |
| 874 | 117.19 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 15 |
| 887 | 117.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 932 | 117.43 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 954 | 117.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |