Os04g0404000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0404000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.12 | 0.528 | 8.62 | 0.714 | 0.22 | 2.32 | 0.418 | 0.236 | -0.0755 | 7.25 | 24.93 | 781 | -- | -- |
| 126.17 | 0.523 | 8.61 | 0.759 | 0.23 | 2.3 | 0.466 | -- | -0.0645 | 7.17 | 25 | 809 | -- | -- |
| 126.49 | 0.524 | 8.62 | 0.694 | 0.232 | 2.34 | -- | 0.436 | -0.0802 | 7.44 | 24.9 | 809 | -- | -- |
| 126.71 | 0.524 | 8.62 | 0.763 | 0.233 | 2.28 | -- | -- | -0.0688 | 7.57 | 25 | 816 | -- | -- |
| 128.6 | 0.528 | 8.63 | 0.691 | -- | 2.38 | -- | 0.447 | -0.0644 | -- | 25.29 | 742 | -- | -- |
| 203.14 | 0.668 | 8.71 | 0.11 | 0.516 | -- | 0.118 | -- | -0.544 | 9.39 | -- | -- | -- | -- |
| 203.19 | 0.668 | 8.71 | 0.115 | 0.515 | -- | -- | -- | -0.544 | 9.44 | -- | -- | -- | -- |
| 128.71 | 0.528 | 8.61 | 0.778 | -- | 2.35 | -- | -- | -0.0356 | -- | 25.49 | 736 | -- | -- |
| 139.98 | 0.551 | 8.65 | -- | 0.258 | 1.95 | -- | -- | -0.212 | 8.21 | 25 | 739 | -- | -- |
| 218.75 | 0.691 | 8.73 | 0.112 | -- | -- | -- | -- | -0.542 | -- | -- | -- | -- | -- |
| 203.54 | 0.667 | 8.72 | -- | 0.515 | -- | -- | -- | -0.557 | 9.42 | -- | -- | -- | -- |
| 142.78 | 0.557 | 8.65 | -- | -- | 2.01 | -- | -- | -0.184 | -- | 25.69 | 725 | -- | -- |
| 219.08 | 0.691 | 8.73 | -- | -- | -- | -- | -- | -0.555 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 6 | 121.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 7 | 121.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 18 | 122.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 20 | 122.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 34 | 122.59 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 43 | 122.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 46 | 122.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 57 | 123.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 68 | 123.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 76 | 123.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 77 | 123.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 90 | 123.35 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 106 | 123.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 558 | 125.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 621 | 126.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 650 | 126.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 675 | 126.44 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 750 | 127.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 795 | 127.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 811 | 127.33 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 817 | 127.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 850 | 127.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 935 | 128.19 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 952 | 128.34 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 969 | 128.40 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |