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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0403600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.46 (0.0367) R2 : 0.896
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.72 (0.0956) R2dC : 0.828 R2C : 0.78
β3 : -2.97 (0.134) R2dE : 0.113 R2E : 0.07
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.123 (0.0775) R2dN8 : 0.000732 R2N8 : -0.00324
σ : 0.688
deviance : 217.97
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_____
C
peak time of C : 6.95
E
wheather : temperature
threshold : 18.75
memory length : 328
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.5
open length of G : 2.58

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.97 0.689 6.44 0.0514 5.73 -3 0.957 1.42 -0.0837 7.01 19.14 322 21.7 2.48
216.36 0.685 6.44 0.0386 5.73 -3.01 0.959 -- -0.0808 7 19.16 320 21.7 2.53
216.98 0.686 6.44 0.0806 5.72 -2.99 -- 1.48 -0.0868 6.99 19.09 323 21.6 2.48
218.26 0.688 6.46 0.0216 5.76 -3 -- -- -0.0916 6.97 18.82 322 21.6 2.58
623.64 1.16 6.89 -0.414 -- -4.75 -- 2.82 -0.425 -- -8.222 174 14.4 10.2
347.51 0.874 6.49 -0.252 5.66 -- 1.24 -- -0.304 7.82 -- -- -- --
351.91 0.878 6.49 -0.22 5.66 -- -- -- -0.306 7.81 -- -- -- --
425.53 0.961 6.58 0.263 -- -5.2 -- -- 0.28 -- 1.519 250 12.4 12.6
217.97 0.688 6.46 -- 5.72 -2.97 -- -- -0.123 6.95 18.75 328 21.5 2.58
2088.78 2.14 6.63 -0.153 -- -- -- -- -0.227 -- -- -- -- --
353.19 0.879 6.48 -- 5.66 -- -- -- -0.281 7.81 -- -- -- --
321.84 0.836 6.67 -- -- -6.31 -- -- -0.257 -- -5.714 420 10.5 12.2
2089.39 2.13 6.62 -- -- -- -- -- -0.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.00 temperature 20.0 270 > th dose dependent rect. 22 3
2 228.19 temperature 20.0 90 > th dose dependent rect. 22 6
3 232.62 temperature 10.0 90 > th dose dependent rect. 7 21
5 233.60 temperature 20.0 270 > th dose dependent rect. 23 1
32 246.11 radiation 1.0 720 > th dose independent rect. 15 3
38 246.90 temperature 25.0 720 > th dose independent rect. 15 3
39 247.14 temperature 20.0 90 > th dose independent rect. 7 21
46 249.05 temperature 30.0 270 < th dose dependent rect. 15 15
50 249.63 temperature 20.0 90 > th dose independent rect. 22 6
55 250.55 radiation 1.0 720 < th dose dependent rect. 15 14
64 251.83 temperature 10.0 720 > th dose dependent rect. 15 2
67 252.05 temperature 20.0 270 > th dose independent rect. 22 3
82 253.53 radiation 1.0 720 > th dose independent rect. 15 18
85 253.56 radiation 1.0 720 < th dose dependent rect. 15 6
90 254.21 radiation 1.0 720 > th dose independent rect. 15 14
107 254.75 temperature 25.0 270 < th dose independent rect. 15 15
132 257.12 temperature 25.0 270 < th dose independent rect. 11 19
147 258.18 radiation 1.0 720 > th dose independent rect. 6 12
153 258.51 radiation 1.0 720 < th dose dependent sin 14 NA
168 259.08 temperature 10.0 270 > th dose dependent rect. 21 13
175 259.54 radiation 1.0 720 < th dose independent rect. 3 18
215 261.03 radiation 1.0 720 < th dose independent rect. 15 14
218 261.09 radiation 1.0 720 < th dose independent rect. 15 6
228 261.38 radiation 1.0 720 > th dose independent rect. 6 23
232 261.52 radiation 1.0 720 < th dose dependent rect. 3 18
233 261.52 radiation 1.0 720 < th dose dependent rect. 10 19
252 261.82 radiation 1.0 720 > th dose independent sin 13 NA
269 262.58 radiation 1.0 720 < th dose dependent rect. 7 22
276 262.91 radiation 1.0 720 > th dose independent rect. 13 23
297 263.61 radiation 1.0 720 < th dose independent sin 14 NA
316 264.43 radiation 1.0 720 < th dose dependent rect. 10 11
365 266.03 radiation 1.0 720 < th dose dependent rect. 7 14
367 266.06 radiation 1.0 720 < th dose independent rect. 7 22
375 266.51 radiation 1.0 720 < th dose independent rect. 1 23
387 266.89 radiation 1.0 720 < th dose independent rect. 10 20
435 267.33 radiation 1.0 720 < th dose dependent rect. 1 23
468 268.42 radiation 1.0 720 < th dose independent rect. 7 15
485 268.75 radiation 1.0 720 < th dose independent rect. 10 12
490 268.87 radiation 1.0 270 < th dose independent rect. 1 21
535 269.98 radiation 1.0 720 > th dose independent rect. 4 14
613 271.17 radiation 1.0 270 < th dose dependent rect. 1 21
634 271.51 precipitation 0.1 270 < th dose independent rect. 5 22
635 271.51 precipitation 0.1 270 < th dose dependent rect. 5 22
668 272.37 radiation 1.0 720 > th dose independent no NA NA
716 272.44 radiation 1.0 720 > th dose independent sin 21 NA
720 272.46 radiation 20.0 270 < th dose dependent rect. 15 15
738 272.75 temperature 25.0 270 < th dose independent sin 11 NA
739 272.75 precipitation 0.1 90 < th dose independent rect. 7 21
740 272.75 precipitation 0.1 90 < th dose dependent rect. 7 21
793 273.56 radiation 1.0 720 < th dose dependent rect. 14 22
800 273.68 temperature 25.0 720 < th dose independent rect. 15 5
815 273.90 radiation 20.0 90 < th dose dependent rect. 4 5
832 274.16 temperature 25.0 720 < th dose independent rect. 11 11
861 274.58 temperature 25.0 270 > th dose independent sin 11 NA
869 274.71 radiation 1.0 720 > th dose independent rect. 11 23
879 274.89 radiation 1.0 720 < th dose independent no NA NA
898 275.13 radiation 30.0 90 < th dose dependent rect. 4 3
943 276.04 humidity 70.0 90 > th dose independent rect. 4 3
964 276.40 radiation 20.0 90 < th dose independent rect. 4 3
968 276.49 radiation 1.0 720 < th dose dependent no NA NA
970 276.57 wind 5.0 90 < th dose independent rect. 4 3
976 276.64 precipitation 0.1 90 < th dose independent rect. 4 3
977 276.64 precipitation 0.1 90 < th dose dependent rect. 4 3
981 276.69 temperature 10.0 720 > th dose dependent rect. 15 10
984 276.71 temperature 10.0 90 > th dose independent rect. 4 3
986 276.71 temperature 30.0 90 < th dose independent rect. 4 3
987 276.71 humidity 50.0 90 > th dose independent rect. 4 3
989 276.71 atmosphere 995.0 90 > th dose independent rect. 4 3
990 276.71 atmosphere 1015.0 90 < th dose independent rect. 4 3
992 276.71 temperature 10.0 90 > th dose independent rect. 7 21