Os04g0402700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0402700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.65 | 0.406 | 12.8 | -0.692 | 1.4 | -0.408 | 0.129 | -4.58 | 0.178 | 0.321 | 5.192 | 1488 | -- | -- |
| 79.94 | 0.416 | 12.9 | -0.561 | 1.42 | 0.434 | -0.216 | -- | 0.135 | 0.393 | 7.93 | 2555 | -- | -- |
| 74.7 | 0.403 | 12.8 | -0.696 | 1.4 | -0.407 | -- | -4.56 | 0.178 | 0.324 | 5.2 | 1500 | -- | -- |
| 79.2 | 0.414 | 12.9 | -0.451 | 1.39 | 0.583 | -- | -- | 0.17 | 0.341 | 8.1 | 2575 | -- | -- |
| 192.84 | 0.65 | 12.9 | -0.716 | -- | -0.606 | -- | -0.0886 | 0.126 | -- | 5.2 | 1500 | -- | -- |
| 84.56 | 0.431 | 12.9 | -0.615 | 1.41 | -- | -0.0695 | -- | 0.104 | 0.317 | -- | -- | -- | -- |
| 84.58 | 0.431 | 12.9 | -0.612 | 1.41 | -- | -- | -- | 0.105 | 0.315 | -- | -- | -- | -- |
| 177.06 | 0.62 | 12.8 | -0.48 | -- | 1.02 | -- | -- | 0.129 | -- | 3.402 | 886 | -- | -- |
| 84.12 | 0.427 | 12.9 | -- | 1.37 | 0.742 | -- | -- | 0.206 | 0.311 | 8.1 | 2566 | -- | -- |
| 209.06 | 0.676 | 12.9 | -0.565 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 94.46 | 0.455 | 12.9 | -- | 1.4 | -- | -- | -- | 0.173 | 0.292 | -- | -- | -- | -- |
| 175.79 | 0.618 | 12.9 | -- | -- | 1.29 | -- | -- | 0.0978 | -- | 3.452 | 892 | -- | -- |
| 217.49 | 0.688 | 12.8 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.27 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 2 | 65.63 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 4 | 66.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 9 | 66.61 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 15 | 67.32 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 18 | 67.41 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 21 | 67.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 26 | 67.91 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 32 | 68.07 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 47 | 68.40 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 78 | 68.88 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 83 | 68.92 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 92 | 69.01 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 11 |
| 124 | 69.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 196 | 69.79 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 197 | 69.80 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 206 | 69.87 | wind | 9.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 215 | 69.96 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 217 | 69.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 20 |
| 254 | 70.28 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 278 | 70.51 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 279 | 70.52 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 290 | 70.57 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 296 | 70.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 308 | 70.71 | wind | 9.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 312 | 70.73 | wind | 9.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 316 | 70.75 | radiation | 20.0 | 90 | < th | dose independent | rect. | 16 | 17 |
| 331 | 70.86 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 345 | 70.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 349 | 70.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 400 | 71.17 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 417 | 71.26 | radiation | 30.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 441 | 71.37 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 21 |
| 453 | 71.41 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 454 | 71.41 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 466 | 71.47 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 471 | 71.50 | wind | 9.0 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 506 | 71.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 16 |
| 515 | 71.72 | humidity | 70.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 520 | 71.77 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 529 | 71.80 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 541 | 71.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 542 | 71.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 543 | 71.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 544 | 71.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 545 | 71.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 548 | 71.84 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 8 |
| 551 | 71.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 552 | 71.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 553 | 71.86 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 571 | 71.92 | radiation | 20.0 | 10 | < th | dose independent | rect. | 17 | 17 |
| 577 | 71.93 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 19 |
| 583 | 71.95 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 586 | 71.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 593 | 71.97 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 606 | 72.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 610 | 72.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 619 | 72.03 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 624 | 72.04 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 647 | 72.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 654 | 72.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 655 | 72.10 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 658 | 72.10 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 664 | 72.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 665 | 72.10 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 680 | 72.12 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 17 |
| 685 | 72.13 | humidity | 80.0 | 90 | < th | dose independent | rect. | 22 | 17 |
| 693 | 72.15 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 702 | 72.16 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 708 | 72.17 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 736 | 72.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 737 | 72.22 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 805 | 72.33 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 827 | 72.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 851 | 72.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 875 | 72.41 | wind | 1.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 902 | 72.44 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 903 | 72.44 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 913 | 72.44 | radiation | 30.0 | 10 | < th | dose independent | rect. | 13 | 22 |
| 927 | 72.45 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 7 |
| 929 | 72.45 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 930 | 72.46 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 938 | 72.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 939 | 72.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 941 | 72.47 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 955 | 72.47 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 956 | 72.47 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 958 | 72.47 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 986 | 72.49 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 993 | 72.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 996 | 72.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |