Os04g0399200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0399200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.84 | 0.438 | 10.1 | 1.48 | 0.324 | 0.25 | 0.855 | -2.01 | -0.287 | 18.1 | 20 | 1337 | -- | -- |
| 94.14 | 0.452 | 10.1 | 1.35 | 0.342 | 0.289 | 0.932 | -- | -0.376 | 19.1 | 13.97 | 1210 | -- | -- |
| 87.79 | 0.436 | 10.1 | 1.48 | 0.373 | 0.331 | -- | -2.26 | -0.299 | 18.4 | 17.9 | 1220 | -- | -- |
| 96.32 | 0.457 | 10.1 | 1.22 | 0.316 | 0.22 | -- | -- | -0.379 | 17.3 | 11.33 | 1489 | -- | -- |
| 94.17 | 0.452 | 10.1 | 1.46 | -- | 0.226 | -- | -2.09 | -0.289 | -- | 20 | 1315 | -- | -- |
| 95.22 | 0.457 | 10.2 | 1.22 | 0.303 | -- | 1.03 | -- | -0.416 | 18.4 | -- | -- | -- | -- |
| 97.53 | 0.462 | 10.1 | 1.21 | 0.318 | -- | -- | -- | -0.412 | 17.6 | -- | -- | -- | -- |
| 97.7 | 0.46 | 10.2 | 1.17 | -- | -0.377 | -- | -- | -0.453 | -- | 52.88 | 630 | -- | -- |
| 135.45 | 0.542 | 10.1 | -- | 0.316 | 0.212 | -- | -- | -0.429 | 17.6 | 10 | 2932 | -- | -- |
| 102.77 | 0.474 | 10.1 | 1.2 | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
| 136.25 | 0.546 | 10.2 | -- | 0.298 | -- | -- | -- | -0.547 | 17.7 | -- | -- | -- | -- |
| 134.54 | 0.54 | 10.2 | -- | -- | -0.418 | -- | -- | -0.591 | -- | 53.46 | 697 | -- | -- |
| 140.87 | 0.554 | 10.2 | -- | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.17 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 2 | 82.64 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 3 | 82.65 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 7 | 83.17 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 11 | 83.53 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 12 | 83.73 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 13 | 83.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 17 | 83.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 18 | 83.78 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 19 | 83.85 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 21 | 83.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 22 | 83.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 27 | 83.97 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 28 | 83.97 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 29 | 83.99 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 30 | 84.02 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 35 | 84.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 38 | 84.24 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 41 | 84.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 44 | 84.31 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 46 | 84.34 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 52 | 84.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 66 | 84.48 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 67 | 84.49 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 70 | 84.52 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 73 | 84.55 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 87 | 84.63 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 99 | 84.68 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 101 | 84.69 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 104 | 84.75 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 110 | 84.79 | wind | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 111 | 84.79 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 120 | 84.82 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 133 | 84.89 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 134 | 84.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 137 | 84.92 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 146 | 84.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 150 | 85.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 152 | 85.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 154 | 85.01 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 186 | 85.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 201 | 85.19 | wind | 1.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 203 | 85.20 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 207 | 85.21 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 208 | 85.21 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 226 | 85.21 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 227 | 85.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 246 | 85.23 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 267 | 85.28 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 271 | 85.28 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 320 | 85.46 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 384 | 85.52 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 402 | 85.60 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 421 | 85.66 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 423 | 85.66 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 425 | 85.67 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 428 | 85.67 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 455 | 85.73 | humidity | 90.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 461 | 85.73 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 470 | 85.76 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 474 | 85.76 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 475 | 85.77 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 479 | 85.77 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 524 | 85.86 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 545 | 85.89 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 562 | 85.91 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 574 | 85.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 598 | 85.99 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 696 | 86.14 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 746 | 86.19 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 754 | 86.20 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 762 | 86.23 | humidity | 90.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 776 | 86.26 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 788 | 86.27 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 801 | 86.30 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 808 | 86.31 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 813 | 86.31 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 815 | 86.32 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 850 | 86.34 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 870 | 86.37 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 895 | 86.40 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 899 | 86.41 | temperature | 30.0 | 90 | < th | dose independent | sin | 4 | NA |
| 926 | 86.44 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 938 | 86.45 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |