Os04g0398800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0398800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.74 | 0.224 | 9.62 | 0.261 | 0.114 | -0.589 | -0.187 | 0.292 | 0.129 | 18.1 | 19.41 | 94 | -- | -- |
| 22.81 | 0.222 | 9.63 | 0.208 | 0.11 | -0.574 | -0.146 | -- | 0.112 | 18.3 | 19.12 | 93 | -- | -- |
| 22.8 | 0.222 | 9.62 | 0.255 | 0.119 | -0.609 | -- | 0.212 | 0.128 | 17.5 | 19.21 | 93 | -- | -- |
| 22.85 | 0.223 | 9.62 | 0.218 | 0.118 | -0.598 | -- | -- | 0.117 | 17.6 | 19.13 | 93 | -- | -- |
| 23.32 | 0.225 | 9.62 | 0.229 | -- | -0.549 | -- | 0.162 | 0.112 | -- | 18.17 | 57 | -- | -- |
| 28.19 | 0.249 | 9.65 | 0.0795 | 0.14 | -- | -0.0846 | -- | 0.0147 | 1.01 | -- | -- | -- | -- |
| 28.21 | 0.249 | 9.65 | 0.0824 | 0.14 | -- | -- | -- | 0.015 | 1.22 | -- | -- | -- | -- |
| 23.33 | 0.225 | 9.63 | 0.202 | -- | -0.548 | -- | -- | 0.103 | -- | 18 | 51 | -- | -- |
| 24.01 | 0.228 | 9.63 | -- | 0.0983 | -0.526 | -- | -- | 0.0938 | 18 | 19.25 | 92 | -- | -- |
| 29.43 | 0.254 | 9.64 | 0.0878 | -- | -- | -- | -- | 0.0178 | -- | -- | -- | -- | -- |
| 28.39 | 0.249 | 9.65 | -- | 0.142 | -- | -- | -- | 0.00579 | 1.24 | -- | -- | -- | -- |
| 24.31 | 0.23 | 9.63 | -- | -- | -0.475 | -- | -- | 0.0735 | -- | 19.4 | 49 | -- | -- |
| 29.64 | 0.254 | 9.65 | -- | -- | -- | -- | -- | 0.00808 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.18 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 22.33 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 15 | 22.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 18 | 22.78 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 20 | 22.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 24 | 22.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 44 | 23.06 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 55 | 23.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 75 | 23.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 78 | 23.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 116 | 23.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 124 | 23.38 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 143 | 23.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 146 | 23.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 156 | 23.49 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 209 | 23.62 | temperature | 20 | 10 | > th | dose dependent | sin | 16 | NA |
| 224 | 23.65 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 21 |
| 225 | 23.65 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 23 |
| 230 | 23.66 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 239 | 23.67 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 240 | 23.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 248 | 23.68 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 251 | 23.69 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 252 | 23.69 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 8 |
| 273 | 23.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 276 | 23.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 15 |
| 287 | 23.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 291 | 23.71 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 10 |
| 320 | 23.73 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 23 |
| 346 | 23.76 | temperature | 30 | 270 | > th | dose independent | sin | 0 | NA |
| 347 | 23.76 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 349 | 23.76 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 404 | 23.80 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 23 |
| 411 | 23.81 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 418 | 23.82 | temperature | 30 | 720 | < th | dose independent | sin | 6 | NA |
| 419 | 23.82 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 429 | 23.82 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 12 |
| 434 | 23.82 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 18 |
| 438 | 23.82 | temperature | 30 | 270 | > th | dose dependent | sin | 4 | NA |
| 456 | 23.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 463 | 23.84 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 473 | 23.85 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 637 | 23.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 638 | 23.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 698 | 23.91 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 713 | 23.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 722 | 23.92 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 15 |
| 735 | 23.92 | temperature | 30 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 759 | 23.93 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 774 | 23.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 776 | 23.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 780 | 23.94 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 830 | 23.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 834 | 23.96 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 21 |
| 838 | 23.96 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 867 | 23.97 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 886 | 23.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 975 | 24.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 984 | 24.01 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 23 |