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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0398400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0178) R2 : 0.00295
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0434 (0.0374) R2dN8 : 0.00381 R2N8 : 0.00295
σ : 0.334
deviance : 51.32
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.08 0.332 2.89 -0.0597 0.00598 -0.299 0.126 -0.836 0.0995 14.1 9 4752 -- --
50.57 0.331 2.91 -0.0219 0.0147 -0.163 -0.101 -- 0.0882 1.72 8.8 4758 -- --
50.14 0.33 2.89 -0.0578 0.00655 -0.298 -- -0.817 0.101 13.9 9 4751 -- --
50.54 0.331 2.91 0.0175 0.0143 -0.158 -- -- 0.0854 1.49 8.6 4715 -- --
50.14 0.33 2.89 -0.0531 -- -0.295 -- -0.808 0.0998 -- 9 4751 -- --
51.13 0.335 2.92 0.0535 0.0295 -- -0.12 -- 0.0485 2.02 -- -- -- --
51.18 0.335 2.92 0.0571 0.0294 -- -- -- 0.0492 2.14 -- -- -- --
50.02 0.329 2.9 0.0401 -- -0.176 -- -- 0.129 -- 10.67 4665 -- --
50.53 0.331 2.91 -- 0.00449 -0.166 -- -- 0.0833 0.6 8.596 4751 -- --
51.23 0.334 2.92 0.0583 -- -- -- -- 0.0499 -- -- -- -- --
51.27 0.335 2.92 -- 0.0305 -- -- -- 0.0428 2.18 -- -- -- --
49.64 0.328 2.88 -- -- -0.236 -- -- 0.184 -- 11.03 4860 -- --
51.32 0.334 2.92 -- -- -- -- -- 0.0434 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.56 wind 9.0 1440 < th dose independent rect. 23 1
2 41.56 temperature 10.0 1440 > th dose independent rect. 23 1
5 41.56 temperature 30.0 1440 < th dose independent rect. 23 1
9 41.56 humidity 50.0 1440 > th dose independent rect. 23 1
19 41.56 atmosphere 995.0 1440 > th dose independent rect. 23 1
20 41.56 radiation 1.0 1440 < th dose independent rect. 23 1
40 41.56 temperature 10.0 1440 > th dose independent rect. 24 23
43 41.56 radiation 1.0 1440 < th dose dependent rect. 23 1
49 41.58 humidity 90.0 30 < th dose independent rect. 22 1
50 41.59 atmosphere 1005.0 30 > th dose dependent rect. 22 1
52 41.62 temperature 25.0 30 > th dose independent rect. 22 1
53 41.62 atmosphere 1005.0 30 > th dose independent rect. 22 1
55 41.63 temperature 15.0 30 > th dose dependent rect. 22 1
59 41.65 precipitation 0.1 30 < th dose independent rect. 22 1
60 41.65 precipitation 0.1 30 < th dose dependent rect. 22 1
61 41.66 wind 1.0 30 > th dose independent rect. 22 1
64 41.67 wind 5.0 30 < th dose independent rect. 22 1
67 41.67 temperature 10.0 30 > th dose independent rect. 22 1
70 41.67 temperature 30.0 30 < th dose independent rect. 22 1
71 41.67 humidity 50.0 30 > th dose independent rect. 22 1
75 41.67 atmosphere 1010.0 30 < th dose independent rect. 22 1
77 41.67 radiation 1.0 30 < th dose independent rect. 22 1
82 41.67 temperature 10.0 30 > th dose independent rect. 23 23
83 41.67 radiation 1.0 30 < th dose dependent rect. 22 1
90 41.68 wind 7.0 30 < th dose dependent rect. 22 1
93 41.71 humidity 50.0 30 > th dose dependent rect. 22 1
95 41.72 humidity 90.0 30 < th dose dependent rect. 22 1
97 41.78 wind 1.0 30 > th dose dependent rect. 22 1
100 41.88 wind 9.0 30 < th dose independent rect. 23 23
101 41.89 atmosphere 1015.0 30 < th dose dependent rect. 22 1
103 41.94 temperature 30.0 30 < th dose dependent rect. 22 1
173 45.17 precipitation 0.1 30 < th dose independent rect. 23 23
174 45.17 precipitation 0.1 30 < th dose dependent rect. 23 23
175 45.45 atmosphere 995.0 30 > th dose independent rect. 23 23
180 45.95 atmosphere 1015.0 30 < th dose independent rect. 23 23
182 46.13 precipitation 0.1 1440 < th dose independent rect. 23 1
183 46.13 precipitation 0.1 1440 < th dose dependent rect. 23 1
193 46.75 humidity 50.0 30 > th dose independent rect. 23 23
214 47.63 temperature 30.0 30 < th dose independent rect. 23 23
234 48.24 radiation 20.0 10 < th dose dependent rect. 23 23
273 48.44 wind 1.0 30 > th dose independent rect. 23 23
275 48.44 humidity 80.0 30 > th dose dependent rect. 11 1
289 48.54 wind 9.0 30 < th dose dependent rect. 23 23
323 48.67 temperature 10.0 720 > th dose independent rect. 3 8
324 48.67 atmosphere 995.0 720 > th dose independent rect. 3 8
325 48.67 temperature 10.0 720 > th dose independent rect. 11 16
328 48.68 atmosphere 1015.0 720 < th dose independent rect. 3 8
330 48.72 wind 9.0 720 < th dose independent rect. 3 8
332 48.72 temperature 10.0 30 > th dose dependent rect. 23 23
334 48.76 radiation 40.0 720 < th dose independent rect. 15 8
336 48.76 temperature 25.0 720 > th dose dependent rect. 4 1
339 48.78 humidity 50.0 720 > th dose independent rect. 3 8
347 48.81 temperature 10.0 720 > th dose independent rect. 15 8
348 48.81 temperature 10.0 720 > th dose independent rect. 23 16
355 48.83 radiation 10.0 10 < th dose independent rect. 23 23
358 48.85 humidity 80.0 10 > th dose independent rect. 11 1
362 48.88 temperature 25.0 720 > th dose dependent rect. 2 2
385 49.01 wind 9.0 720 < th dose independent rect. 15 8
410 49.21 wind 9.0 720 < th dose independent rect. 23 16
414 49.23 temperature 25.0 90 > th dose dependent rect. 21 6
431 49.33 temperature 25.0 720 > th dose independent rect. 4 1
433 49.33 wind 9.0 720 < th dose independent rect. 11 16
434 49.33 atmosphere 1015.0 720 < th dose independent rect. 23 16
439 49.35 precipitation 0.1 720 < th dose independent rect. 11 16
440 49.35 precipitation 0.1 720 < th dose dependent rect. 11 16
443 49.37 precipitation 0.1 720 < th dose independent rect. 15 8
444 49.37 precipitation 0.1 720 < th dose dependent rect. 15 8
448 49.39 temperature 25.0 90 > th dose independent rect. 21 6
454 49.41 temperature 10.0 720 > th dose dependent rect. 23 1
536 49.52 atmosphere 995.0 720 > th dose independent rect. 23 16
546 49.55 humidity 80.0 30 < th dose independent rect. 1 3
553 49.55 humidity 50.0 30 > th dose dependent rect. 23 23
554 49.56 humidity 80.0 30 < th dose independent rect. 1 1
560 49.56 humidity 80.0 30 < th dose dependent rect. 1 1
577 49.58 radiation 40.0 90 < th dose dependent rect. 21 16
578 49.58 atmosphere 995.0 30 > th dose dependent rect. 23 23
589 49.61 wind 3.0 720 > th dose independent rect. 11 1
610 49.62 radiation 10.0 90 < th dose independent rect. 10 3
618 49.63 radiation 10.0 90 < th dose independent rect. 10 1
632 49.65 humidity 50.0 90 > th dose dependent rect. 23 11
656 49.72 radiation 40.0 30 < th dose independent rect. 23 12
658 49.73 temperature 10.0 90 > th dose dependent rect. 23 10
659 49.74 precipitation 0.1 720 < th dose independent rect. 3 8
660 49.74 atmosphere 995.0 720 > th dose independent rect. 11 16
666 49.74 precipitation 0.1 720 < th dose dependent rect. 3 8
686 49.76 radiation 40.0 90 < th dose independent rect. 21 18
698 49.77 radiation 20.0 90 < th dose dependent rect. 10 3
705 49.78 wind 1.0 90 > th dose independent rect. 9 14
706 49.78 radiation 20.0 90 < th dose dependent rect. 10 1
707 49.78 temperature 10.0 30 > th dose dependent rect. 23 12
708 49.79 temperature 15.0 720 > th dose independent rect. 11 1
711 49.79 atmosphere 1015.0 90 < th dose independent rect. 23 10
718 49.80 radiation 20.0 30 < th dose independent rect. 15 7
720 49.80 precipitation 0.1 90 < th dose independent rect. 9 14
724 49.80 precipitation 0.1 90 < th dose dependent rect. 9 14
726 49.81 atmosphere 995.0 720 > th dose independent rect. 11 1
727 49.81 atmosphere 1015.0 720 < th dose independent rect. 11 1
728 49.81 precipitation 0.1 720 < th dose independent rect. 11 1
746 49.81 temperature 10.0 1440 > th dose independent rect. 12 12
749 49.81 temperature 10.0 1440 > th dose independent rect. 24 12
752 49.81 humidity 50.0 90 > th dose independent rect. 23 12
753 49.81 atmosphere 995.0 1440 > th dose independent rect. 24 12
756 49.81 temperature 10.0 720 > th dose independent rect. 12 23
758 49.81 precipitation 0.1 720 < th dose dependent rect. 11 1
767 49.82 radiation 1.0 720 > th dose independent rect. 11 1
768 49.82 atmosphere 995.0 720 > th dose independent rect. 15 8
775 49.82 radiation 40.0 90 < th dose dependent rect. 23 11
778 49.83 wind 9.0 90 < th dose independent rect. 23 10
779 49.83 temperature 10.0 90 > th dose independent rect. 23 10
780 49.83 humidity 50.0 90 > th dose independent rect. 23 10
782 49.83 atmosphere 995.0 90 > th dose independent rect. 23 10
783 49.83 wind 1.0 90 > th dose independent rect. 11 12
784 49.83 precipitation 0.1 90 < th dose independent rect. 11 12
785 49.83 temperature 10.0 90 > th dose independent rect. 9 14
791 49.83 precipitation 0.1 90 < th dose dependent rect. 11 12
794 49.84 wind 9.0 720 < th dose independent rect. 11 1
797 49.84 radiation 40.0 30 < th dose independent rect. 11 12
798 49.84 radiation 20.0 90 < th dose independent rect. 21 16
800 49.84 precipitation 0.1 720 < th dose independent rect. 24 23
803 49.84 precipitation 0.1 720 < th dose dependent rect. 24 23
836 49.86 radiation 40.0 90 < th dose independent rect. 23 10
837 49.86 precipitation 0.1 90 < th dose independent rect. 23 10
839 49.86 humidity 50.0 720 > th dose independent rect. 23 16
842 49.86 atmosphere 995.0 30 > th dose dependent rect. 22 5
844 49.86 precipitation 0.1 90 < th dose dependent rect. 23 10
848 49.87 atmosphere 1015.0 720 < th dose independent rect. 23 1
851 49.87 temperature 30.0 90 < th dose independent rect. 23 10
852 49.87 temperature 10.0 90 > th dose independent rect. 11 12
853 49.87 temperature 10.0 90 > th dose independent rect. 23 12
854 49.87 atmosphere 995.0 90 > th dose independent rect. 23 12
857 49.87 wind 9.0 90 < th dose independent rect. 9 14
861 49.87 radiation 30.0 10 < th dose dependent rect. 15 7
864 49.88 humidity 90.0 720 < th dose independent rect. 11 1
868 49.88 atmosphere 995.0 10 > th dose independent rect. 16 6
869 49.88 wind 9.0 90 < th dose independent rect. 23 12
871 49.88 atmosphere 1015.0 10 < th dose independent rect. 22 18
889 49.89 humidity 50.0 1440 > th dose independent rect. 24 10
897 49.89 atmosphere 1015.0 30 < th dose independent rect. 11 12
903 49.89 atmosphere 995.0 10 > th dose dependent rect. 16 6
906 49.90 humidity 50.0 720 > th dose independent rect. 11 1
907 49.90 wind 3.0 30 < th dose independent rect. 22 5
910 49.90 temperature 30.0 30 < th dose independent rect. 23 12
911 49.90 atmosphere 1015.0 90 < th dose independent rect. 23 12
914 49.90 wind 9.0 720 < th dose dependent rect. 23 1
919 49.91 wind 1.0 10 > th dose independent rect. 16 6
920 49.91 wind 9.0 10 < th dose independent rect. 16 6
921 49.91 temperature 10.0 10 > th dose independent rect. 16 6
924 49.91 atmosphere 1010.0 10 < th dose independent rect. 16 6
928 49.91 precipitation 0.1 10 < th dose independent rect. 16 6
931 49.91 wind 9.0 30 < th dose independent rect. 11 12
932 49.91 humidity 90.0 30 < th dose independent rect. 11 12
934 49.91 precipitation 0.1 90 < th dose independent rect. 23 12
936 49.91 temperature 10.0 10 > th dose independent rect. 22 18
937 49.91 precipitation 0.1 10 < th dose independent rect. 22 18
946 49.91 precipitation 0.1 10 < th dose dependent rect. 16 6
949 49.91 precipitation 0.1 90 < th dose dependent rect. 23 12
951 49.91 precipitation 0.1 10 < th dose dependent rect. 22 18
953 49.92 temperature 25.0 1440 < th dose independent rect. 4 1
960 49.92 atmosphere 1015.0 90 < th dose independent rect. 9 14
969 49.92 wind 9.0 30 < th dose dependent rect. 23 12
975 49.93 atmosphere 995.0 10 > th dose independent rect. 22 18
985 49.93 temperature 10.0 10 > th dose dependent rect. 16 6
1000 49.94 temperature 10.0 1440 > th dose independent rect. 17 6