FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0397800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0325) R2 : 0.000178
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0195 (0.0684) R2dN8 : 0.000229 R2N8 : 0.000178
σ : 0.611
deviance : 171.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.03 0.598 3.04 -0.167 0.125 -0.532 -0.39 1.62 -0.01 9.93 1 2 -- --
164.71 0.598 3.03 -0.13 0.123 -0.426 -0.299 -- 0.0063 9.49 0.9436 4 -- --
162.61 0.594 3.04 -0.18 0.128 -0.525 -- 1.53 -0.0101 9.63 0.9869 2 -- --
165.05 0.598 3.03 -0.133 0.131 -0.431 -- -- 0.00841 9.53 0.9502 4 -- --
163.58 0.596 3.04 -0.181 -- -0.526 -- 1.55 -0.0101 -- 0.9829 2 -- --
169.29 0.61 3.03 -0.0804 0.183 -- -0.362 -- 0.0063 7.35 -- -- -- --
169.63 0.61 3.03 -0.089 0.184 -- -- -- 0.00662 7.02 -- -- -- --
166.06 0.6 3.03 -0.134 -- -0.434 -- -- 0.00884 -- 0.9442 4 -- --
165.51 0.599 3.02 -- 0.131 -0.417 -- -- 0.0231 9.5 0.9768 4 -- --
171.41 0.612 3.03 -0.0853 -- -- -- -- 0.00999 -- -- -- -- --
169.84 0.61 3.02 -- 0.183 -- -- -- 0.0165 7.05 -- -- -- --
166.53 0.601 3.03 -- -- -0.42 -- -- 0.0237 -- 0.9425 4 -- --
171.61 0.611 3.03 -- -- -- -- -- 0.0195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.61 wind 3.0 30 < th dose independent rect. 2 1
2 149.61 wind 7.0 30 < th dose dependent rect. 2 1
3 149.62 humidity 80.0 30 > th dose independent rect. 2 1
5 149.63 temperature 20.0 30 > th dose independent rect. 2 1
7 149.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
10 149.64 humidity 80.0 30 > th dose dependent rect. 2 1
16 149.70 temperature 10.0 30 > th dose dependent rect. 2 1
19 149.71 temperature 10.0 30 > th dose independent rect. 2 1
21 149.71 temperature 30.0 30 < th dose independent rect. 2 1
22 149.71 humidity 50.0 30 > th dose independent rect. 2 1
25 149.71 atmosphere 995.0 30 > th dose independent rect. 2 1
26 149.71 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 149.71 radiation 1.0 30 < th dose independent rect. 2 1
33 149.71 precipitation 0.1 30 < th dose independent rect. 2 1
34 149.71 temperature 10.0 30 > th dose independent rect. 3 23
36 149.71 radiation 1.0 30 < th dose dependent rect. 2 1
41 149.71 precipitation 0.1 30 < th dose dependent rect. 2 1
48 149.83 atmosphere 995.0 30 > th dose dependent rect. 2 1
59 150.05 temperature 30.0 30 < th dose dependent rect. 2 1
95 150.68 wind 1.0 30 > th dose independent rect. 2 1
102 151.91 atmosphere 995.0 30 > th dose independent rect. 3 23
104 152.46 wind 9.0 1440 < th dose independent rect. 3 1
105 152.46 temperature 10.0 1440 > th dose independent rect. 3 1
108 152.46 temperature 30.0 1440 < th dose independent rect. 3 1
112 152.46 humidity 50.0 1440 > th dose independent rect. 3 1
121 152.46 atmosphere 995.0 1440 > th dose independent rect. 3 1
122 152.46 radiation 1.0 1440 < th dose independent rect. 3 1
142 152.46 temperature 10.0 1440 > th dose independent rect. 4 23
145 152.46 radiation 1.0 1440 < th dose dependent rect. 3 1
177 155.27 precipitation 0.1 30 < th dose independent rect. 3 23
178 155.27 precipitation 0.1 30 < th dose dependent rect. 3 23
179 155.38 temperature 30.0 30 < th dose independent rect. 3 23
180 155.62 humidity 50.0 30 > th dose independent rect. 3 23
187 156.48 wind 9.0 30 < th dose independent rect. 3 23
197 158.19 wind 1.0 10 < th dose independent rect. 21 6
213 158.68 temperature 25.0 270 > th dose independent rect. 23 4
229 159.12 wind 1.0 10 < th dose independent rect. 11 16
235 159.49 temperature 25.0 270 > th dose dependent rect. 23 4
240 159.75 temperature 25.0 270 > th dose dependent rect. 23 1
245 159.94 wind 1.0 10 < th dose independent rect. 6 21
259 160.36 temperature 25.0 270 > th dose independent rect. 23 1
276 160.71 wind 1.0 30 < th dose dependent rect. 21 6
300 161.12 wind 3.0 30 < th dose dependent rect. 1 6
323 161.49 wind 1.0 10 > th dose independent sin 15 NA
351 161.79 precipitation 0.1 43200 > th dose dependent rect. 1 17
353 161.86 precipitation 0.1 43200 > th dose dependent rect. 23 19
359 161.93 atmosphere 1015.0 30 < th dose independent rect. 3 23
366 162.01 wind 1.0 30 < th dose dependent rect. 11 16
374 162.12 wind 1.0 43200 > th dose independent rect. 4 1
384 162.24 precipitation 0.1 43200 > th dose dependent rect. 5 13
389 162.28 temperature 20.0 10 > th dose independent rect. 1 6
418 162.46 precipitation 0.1 720 < th dose independent rect. 15 16
420 162.46 precipitation 0.1 720 < th dose dependent rect. 15 16
422 162.48 precipitation 0.1 43200 > th dose dependent sin 1 NA
436 162.58 wind 1.0 30 > th dose independent rect. 3 23
454 162.59 temperature 30.0 1440 > th dose independent rect. 12 2
473 162.65 wind 1.0 43200 < th dose independent rect. 4 1
474 162.65 temperature 30.0 1440 < th dose independent rect. 12 2
482 162.68 wind 1.0 10 < th dose independent sin 15 NA
487 162.69 wind 1.0 10 < th dose independent rect. 2 7
488 162.69 precipitation 0.1 43200 > th dose independent rect. 24 18
489 162.69 precipitation 0.1 43200 < th dose independent rect. 24 18
490 162.69 precipitation 0.1 43200 > th dose independent rect. 22 20
491 162.69 precipitation 0.1 43200 < th dose independent rect. 22 20
492 162.69 precipitation 0.1 43200 < th dose dependent rect. 24 18
493 162.69 precipitation 0.1 43200 < th dose dependent rect. 22 20
523 162.81 precipitation 0.1 43200 > th dose dependent rect. 17 18
557 162.92 precipitation 0.1 43200 > th dose independent rect. 17 18
558 162.92 precipitation 0.1 43200 < th dose independent rect. 17 18
560 162.92 precipitation 0.1 43200 < th dose dependent rect. 17 18
579 162.97 radiation 10.0 43200 < th dose dependent rect. 10 2
602 163.04 precipitation 0.1 43200 > th dose independent rect. 17 21
604 163.05 precipitation 0.1 43200 < th dose independent rect. 17 21
606 163.05 precipitation 0.1 43200 < th dose dependent rect. 17 21
608 163.06 wind 5.0 10 > th dose independent rect. 24 2
614 163.06 precipitation 0.1 43200 > th dose independent rect. 5 15
615 163.06 precipitation 0.1 43200 < th dose independent rect. 5 15
619 163.06 wind 5.0 10 > th dose dependent rect. 24 2
624 163.06 precipitation 0.1 43200 < th dose dependent rect. 5 15
649 163.12 precipitation 0.1 30 > th dose independent rect. 23 1
651 163.12 precipitation 0.1 1440 < th dose independent rect. 9 1
655 163.12 precipitation 0.1 43200 > th dose independent rect. 19 19
657 163.12 precipitation 0.1 30 > th dose dependent rect. 23 1
659 163.12 precipitation 0.1 1440 < th dose dependent rect. 9 1
663 163.13 precipitation 0.1 43200 < th dose independent sin 1 NA
667 163.13 precipitation 0.1 43200 < th dose independent rect. 19 19
668 163.13 precipitation 0.1 43200 < th dose dependent sin 1 NA
671 163.13 precipitation 0.1 43200 < th dose dependent rect. 19 19
672 163.14 precipitation 0.1 43200 > th dose independent sin 1 NA
691 163.15 precipitation 0.1 43200 < th dose independent rect. 6 12
694 163.15 precipitation 0.1 43200 > th dose dependent sin 9 NA
703 163.15 precipitation 0.1 43200 < th dose dependent rect. 6 12
704 163.16 radiation 10.0 43200 > th dose independent rect. 11 2
705 163.16 precipitation 0.1 43200 > th dose independent rect. 6 12
710 163.17 temperature 20.0 30 > th dose independent rect. 1 13
728 163.19 wind 1.0 10 > th dose independent rect. 14 23
732 163.20 precipitation 0.1 43200 > th dose independent sin 10 NA
733 163.20 precipitation 0.1 43200 < th dose independent sin 10 NA
734 163.20 wind 1.0 30 > th dose independent rect. 14 12
737 163.20 precipitation 0.1 43200 < th dose dependent sin 10 NA
743 163.22 humidity 90.0 1440 > th dose independent rect. 10 1
762 163.25 precipitation 0.1 43200 > th dose dependent rect. 21 17
772 163.27 wind 1.0 10 > th dose independent rect. 14 14
773 163.27 precipitation 0.1 43200 > th dose dependent rect. 19 17
775 163.28 precipitation 0.1 43200 > th dose dependent rect. 19 19
776 163.29 atmosphere 1000.0 43200 < th dose independent rect. 11 1
789 163.31 atmosphere 1000.0 43200 > th dose independent rect. 11 1
795 163.32 precipitation 0.1 1440 > th dose independent rect. 9 2
802 163.32 precipitation 0.1 43200 > th dose independent rect. 19 23
803 163.32 precipitation 0.1 43200 < th dose independent rect. 19 23
805 163.32 precipitation 0.1 1440 > th dose dependent rect. 9 2
811 163.32 precipitation 0.1 43200 < th dose dependent rect. 19 23
812 163.33 precipitation 0.1 43200 < th dose independent rect. 1 4
816 163.33 precipitation 0.1 43200 < th dose dependent rect. 1 4
832 163.36 precipitation 0.1 43200 < th dose independent rect. 19 12
841 163.36 precipitation 0.1 43200 < th dose dependent rect. 19 12
846 163.37 precipitation 0.1 43200 > th dose independent rect. 19 12
877 163.40 precipitation 0.1 43200 > th dose independent rect. 1 4
885 163.40 humidity 90.0 1440 > th dose dependent rect. 10 1
904 163.42 atmosphere 1000.0 43200 > th dose independent rect. 9 3
905 163.42 atmosphere 1000.0 43200 < th dose independent rect. 9 3
914 163.42 precipitation 0.1 43200 > th dose dependent rect. 1 4
919 163.42 wind 1.0 30 < th dose dependent rect. 6 21
922 163.43 precipitation 0.1 43200 > th dose independent rect. 23 6
928 163.43 radiation 40.0 30 < th dose independent rect. 3 23
936 163.44 precipitation 0.1 43200 < th dose independent rect. 19 14
944 163.44 precipitation 0.1 43200 < th dose dependent rect. 19 14
951 163.45 precipitation 0.1 43200 < th dose independent rect. 23 6
955 163.45 precipitation 0.1 43200 < th dose dependent rect. 23 6
972 163.47 precipitation 0.1 43200 > th dose dependent rect. 23 6
990 163.49 wind 5.0 10 > th dose dependent rect. 22 11