Os04g0397400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0397400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.09 | 0.245 | 10.4 | 1.21 | 0.173 | -0.521 | -0.146 | 1.71 | 0.179 | 12.2 | 19.3 | 1000 | -- | -- |
| 28.72 | 0.25 | 10.4 | 0.98 | 0.24 | -0.577 | -0.355 | -- | 0.144 | 11.7 | 14.92 | 9223 | -- | -- |
| 27.17 | 0.243 | 10.4 | 1.22 | 0.174 | -0.522 | -- | 1.8 | 0.186 | 12.2 | 19.25 | 993 | -- | -- |
| 29.35 | 0.252 | 10.4 | 0.939 | 0.246 | -0.54 | -- | -- | 0.143 | 11.8 | 14.93 | 9132 | -- | -- |
| 28.82 | 0.25 | 10.4 | 1.26 | -- | -0.626 | -- | 1.9 | 0.206 | -- | 19.58 | 964 | -- | -- |
| 33.89 | 0.273 | 10.5 | 0.644 | 0.271 | -- | -0.374 | -- | -0.0291 | 11.8 | -- | -- | -- | -- |
| 34.5 | 0.275 | 10.5 | 0.629 | 0.272 | -- | -- | -- | -0.0307 | 11.8 | -- | -- | -- | -- |
| 33.11 | 0.268 | 10.4 | 0.962 | -- | -0.609 | -- | -- | 0.157 | -- | 13.4 | 9621 | -- | -- |
| 44.89 | 0.312 | 10.5 | -- | 0.263 | -0.029 | -- | -- | -0.0947 | 11.6 | 13.94 | 6970 | -- | -- |
| 39.16 | 0.292 | 10.5 | 0.621 | -- | -- | -- | -- | -0.0342 | -- | -- | -- | -- | -- |
| 44.91 | 0.313 | 10.5 | -- | 0.265 | -- | -- | -- | -0.101 | 11.6 | -- | -- | -- | -- |
| 47.1 | 0.32 | 10.5 | -- | -- | -0.206 | -- | -- | -0.145 | -- | 33.8 | 2452 | -- | -- |
| 49.32 | 0.328 | 10.5 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.78 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 2 | 25.79 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 7 | 25.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 9 | 25.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 12 | 25.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 20 |
| 15 | 25.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 16 | 25.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 19 | 26.00 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 26 | 26.02 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 28 | 26.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 30 | 26.03 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 39 | 26.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 48 | 26.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 56 | 26.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 66 | 26.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 86 | 26.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 98 | 26.19 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 110 | 26.21 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |
| 118 | 26.22 | wind | 3 | 43200 | > th | dose independent | sin | 4 | NA |
| 149 | 26.25 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 165 | 26.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 12 |
| 176 | 26.29 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 201 | 26.31 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 213 | 26.33 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 219 | 26.33 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 220 | 26.34 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 243 | 26.36 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 244 | 26.36 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 284 | 26.41 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 286 | 26.41 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 318 | 26.45 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 341 | 26.46 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 347 | 26.47 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 366 | 26.48 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 377 | 26.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 389 | 26.51 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 400 | 26.52 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 404 | 26.53 | humidity | 90 | 14400 | < th | dose independent | sin | 16 | NA |
| 415 | 26.53 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 428 | 26.54 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 17 |
| 485 | 26.58 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 493 | 26.59 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 496 | 26.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 497 | 26.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 24 | 8 |
| 500 | 26.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 22 | 10 |
| 518 | 26.60 | radiation | 40 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 536 | 26.60 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 571 | 26.63 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 572 | 26.63 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 577 | 26.63 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 18 |
| 578 | 26.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 599 | 26.64 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 600 | 26.64 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 616 | 26.65 | humidity | 80 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 619 | 26.65 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 620 | 26.65 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 623 | 26.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 626 | 26.65 | wind | 5 | 43200 | < th | dose dependent | sin | 3 | NA |
| 652 | 26.66 | wind | 1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 691 | 26.68 | radiation | 10 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 734 | 26.69 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 824 | 26.73 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 835 | 26.73 | wind | 9 | 43200 | < th | dose dependent | sin | 3 | NA |
| 844 | 26.74 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 848 | 26.74 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 852 | 26.74 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 866 | 26.75 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 879 | 26.75 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 888 | 26.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 909 | 26.76 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 18 |
| 942 | 26.77 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 957 | 26.78 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 965 | 26.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 973 | 26.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 15 |