Os04g0397100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ClpC protease.
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Os04g0397100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ClpC protease.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.64 | 0.233 | 13.9 | 1.27 | 0.658 | -0.776 | -0.0555 | 2.06 | 0.0458 | 20.4 | 15.99 | 1945 | -- | -- |
| 27.72 | 0.245 | 14 | 0.961 | 0.574 | -0.727 | 0.0365 | -- | -0.00489 | 20.4 | 15.44 | 7000 | -- | -- |
| 24.65 | 0.231 | 13.9 | 1.27 | 0.659 | -0.777 | -- | 2.05 | 0.0447 | 20.4 | 15.99 | 1952 | -- | -- |
| 27.14 | 0.243 | 14 | 0.884 | 0.553 | -0.78 | -- | -- | -0.057 | 20.5 | 12.4 | 5783 | -- | -- |
| 44.87 | 0.312 | 13.9 | 1.25 | -- | -0.705 | -- | 1.6 | 0.0135 | -- | 12.93 | 4428 | -- | -- |
| 38.83 | 0.292 | 14 | 0.521 | 0.593 | -- | 0.013 | -- | -0.235 | 20.4 | -- | -- | -- | -- |
| 38.83 | 0.292 | 14 | 0.521 | 0.593 | -- | -- | -- | -0.235 | 20.4 | -- | -- | -- | -- |
| 46.53 | 0.318 | 14 | 0.924 | -- | -0.839 | -- | -- | -0.0523 | -- | 12.44 | 5790 | -- | -- |
| 42.06 | 0.302 | 14 | -- | 0.633 | -0.421 | -- | -- | -0.22 | 20.5 | 16.14 | 1980 | -- | -- |
| 58.42 | 0.357 | 14 | 0.518 | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
| 45.99 | 0.317 | 14 | -- | 0.591 | -- | -- | -- | -0.293 | 20.5 | -- | -- | -- | -- |
| 61.45 | 0.365 | 14 | -- | -- | -0.45 | -- | -- | -0.231 | -- | 12.07 | 1439 | -- | -- |
| 65.49 | 0.378 | 14 | -- | -- | -- | -- | -- | -0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.66 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 23.67 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 4 | 23.67 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 5 | 23.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 6 | 23.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 11 | 23.69 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 13 | 23.69 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 19 | 23.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 21 |
| 24 | 23.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 36 | 23.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 44 | 23.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 16 |
| 46 | 23.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 18 |
| 54 | 23.74 | wind | 5 | 43200 | > th | dose dependent | sin | 1 | NA |
| 63 | 23.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 65 | 23.75 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 66 | 23.75 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 95 | 23.77 | wind | 7 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 111 | 23.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 112 | 23.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 114 | 23.78 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 115 | 23.78 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 134 | 23.79 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 138 | 23.79 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 141 | 23.79 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 158 | 23.80 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 159 | 23.80 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 185 | 23.81 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 187 | 23.81 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 211 | 23.82 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 215 | 23.82 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 242 | 23.83 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 247 | 23.83 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 251 | 23.83 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 252 | 23.83 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 253 | 23.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 301 | 23.85 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 302 | 23.85 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 312 | 23.86 | wind | 7 | 43200 | < th | dose independent | sin | 4 | NA |
| 381 | 23.88 | wind | 7 | 43200 | > th | dose independent | sin | 4 | NA |
| 434 | 23.89 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 456 | 23.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 507 | 23.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 561 | 23.96 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 590 | 23.97 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 735 | 24.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 787 | 24.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 846 | 24.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 925 | 24.10 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 996 | 24.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |