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Os04g0397000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Defender against cell death 1 (DAD-1) (Defender against apoptotic death 1 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0167) R2 : 0.0879
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.233 (0.0352) R2dN8 : 0.113 R2N8 : 0.0879
σ : 0.315
deviance : 45.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.45 0.232 11.5 0.743 0.181 -0.34 -0.134 -0.0453 0.272 16.9 1010 3800 -- --
24.46 0.23 11.5 0.737 0.18 -0.338 -0.139 -- 0.272 16.9 1010 3780 -- --
24.48 0.23 11.5 0.746 0.181 -0.339 -- -0.0619 0.272 17.2 1010 3790 -- --
24.49 0.23 11.5 0.734 0.181 -0.337 -- -- 0.27 17.2 1010 3780 -- --
25.98 0.237 11.5 0.714 -- -0.291 -- -0.183 0.258 -- 1011 7273 -- --
27.2 0.244 11.5 0.806 0.165 -- -0.108 -- 0.327 17 -- -- -- --
27.22 0.244 11.5 0.806 0.165 -- -- -- 0.326 17.3 -- -- -- --
26.03 0.238 11.5 0.657 -- -0.281 -- -- 0.251 -- 1011 7262 -- --
27.1 0.242 11.6 -- 0.178 -0.689 -- -- 0.0845 17.4 1013 47520 -- --
28.64 0.25 11.5 0.8 -- -- -- -- 0.322 -- -- -- -- --
44.34 0.311 11.5 -- 0.151 -- -- -- 0.237 17.5 -- -- -- --
28.56 0.249 11.6 -- -- -0.682 -- -- 0.0707 -- 1013 47520 -- --
45.53 0.315 11.5 -- -- -- -- -- 0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.43 radiation 1 1440 < th dose independent rect. 11 1
2 23.43 radiation 1 1440 < th dose dependent rect. 11 1
3 23.66 atmosphere 1005 270 > th dose dependent rect. 24 6
6 23.78 humidity 60 43200 < th dose dependent rect. 24 9
9 23.80 humidity 60 43200 < th dose dependent rect. 2 7
18 23.99 wind 9 14400 > th dose independent rect. 14 17
22 24.00 wind 9 14400 > th dose independent rect. 14 15
26 24.02 wind 9 14400 < th dose independent rect. 14 19
33 24.05 wind 9 14400 > th dose independent rect. 14 11
36 24.06 wind 9 14400 < th dose independent rect. 14 7
38 24.06 wind 9 14400 > th dose independent rect. 14 9
56 24.10 wind 9 14400 > th dose independent sin 14 NA
64 24.11 wind 9 14400 > th dose dependent rect. 14 20
73 24.12 wind 9 14400 > th dose dependent rect. 14 16
105 24.18 wind 9 14400 < th dose independent sin 15 NA
106 24.18 wind 1 1440 > th dose independent rect. 23 2
110 24.18 wind 9 14400 > th dose dependent rect. 14 10
120 24.19 wind 9 14400 > th dose dependent rect. 14 6
131 24.20 wind 9 14400 > th dose dependent sin 15 NA
136 24.20 wind 9 14400 > th dose dependent rect. 14 22
142 24.22 humidity 50 43200 < th dose independent rect. 3 6
219 24.29 radiation 20 4320 < th dose independent rect. 17 10
232 24.30 wind 7 14400 < th dose independent rect. 16 1
236 24.30 humidity 50 43200 > th dose independent rect. 22 11
250 24.31 radiation 10 4320 > th dose dependent rect. 17 1
282 24.33 atmosphere 1010 4320 > th dose dependent rect. 22 1
305 24.35 radiation 20 1440 < th dose independent rect. 12 1
316 24.35 temperature 20 4320 < th dose dependent rect. 18 1
322 24.36 humidity 70 43200 < th dose independent rect. 19 1
350 24.37 wind 7 14400 > th dose independent rect. 16 1
380 24.38 radiation 10 4320 < th dose independent rect. 10 20
417 24.40 atmosphere 1010 14400 < th dose independent rect. 22 1
448 24.41 radiation 20 4320 < th dose independent rect. 17 3
465 24.42 radiation 10 43200 < th dose independent rect. 14 1
478 24.42 wind 9 14400 < th dose independent rect. 16 23
502 24.43 radiation 10 4320 < th dose independent rect. 10 9
523 24.44 wind 9 14400 < th dose independent rect. 14 1
524 24.44 atmosphere 1010 14400 > th dose independent rect. 22 1
525 24.44 radiation 20 4320 < th dose independent rect. 17 1
557 24.45 radiation 10 43200 < th dose independent rect. 12 3
558 24.45 humidity 50 43200 > th dose independent rect. 2 7
590 24.46 wind 1 14400 > th dose independent rect. 12 1
591 24.46 wind 5 720 > th dose independent rect. 14 1
607 24.46 humidity 70 43200 < th dose independent rect. 19 19
609 24.46 humidity 70 43200 < th dose independent rect. 16 21
610 24.46 humidity 70 43200 < th dose independent rect. 19 21
640 24.47 humidity 70 43200 < th dose independent sin 14 NA
642 24.47 atmosphere 1010 14400 > th dose independent rect. 14 1
644 24.47 atmosphere 1010 14400 < th dose independent rect. 14 2
668 24.47 atmosphere 1010 4320 > th dose dependent sin 12 NA
670 24.47 wind 1 14400 < th dose dependent rect. 12 1
693 24.48 wind 1 14400 < th dose independent rect. 12 1
694 24.48 humidity 70 43200 > th dose independent rect. 19 1
699 24.48 humidity 50 43200 > th dose independent rect. 4 5
705 24.48 humidity 70 43200 < th dose independent rect. 15 12
714 24.48 humidity 70 43200 < th dose independent rect. 12 19
735 24.48 atmosphere 1010 4320 > th dose dependent rect. 1 1
741 24.48 temperature 15 90 > th dose dependent rect. 19 7
749 24.48 radiation 10 43200 > th dose dependent rect. 17 13
762 24.49 humidity 70 43200 < th dose independent no NA NA
774 24.49 humidity 70 43200 < th dose independent rect. 12 17
781 24.49 humidity 70 43200 > th dose independent rect. 19 19
792 24.49 humidity 70 43200 > th dose independent rect. 19 21
795 24.49 humidity 70 43200 > th dose independent rect. 15 22
809 24.49 radiation 10 43200 > th dose dependent rect. 17 1
817 24.49 atmosphere 1005 10 > th dose dependent rect. 2 6
852 24.50 temperature 20 4320 > th dose independent rect. 20 1
856 24.50 humidity 50 43200 > th dose independent rect. 21 8
869 24.50 humidity 70 43200 < th dose independent rect. 12 15
874 24.50 humidity 70 43200 < th dose independent rect. 22 16
888 24.50 humidity 70 43200 > th dose independent rect. 11 20
896 24.50 humidity 70 43200 < th dose independent rect. 6 21
913 24.50 humidity 70 43200 < th dose independent rect. 2 23
920 24.50 humidity 70 43200 < th dose independent rect. 22 23
921 24.50 radiation 10 43200 < th dose dependent rect. 13 1
955 24.51 atmosphere 1010 14400 > th dose independent rect. 16 1
958 24.51 atmosphere 1010 14400 > th dose independent rect. 13 4
965 24.51 humidity 70 43200 > th dose independent rect. 15 12
980 24.51 humidity 70 43200 > th dose independent rect. 11 18